Song JS - Search Results

1

High accuracy label-free classification of single-cell kinetic states from holographic cytometry of human melanoma cells.

Hejna M, Jorapur A, Song JS, Judson RL. Hejna M, et al. Sci Rep. 2017 Sep 20;7(1):11943. doi: 10.1038/s41598-017-12165-1. Sci Rep. 2017. PMID: 28931937 Free PMC article.

2

YAP Induces Human Naive Pluripotency.

Qin H, Hejna M, Liu Y, Percharde M, Wossidlo M, Blouin L, Durruthy-Durruthy J, Wong P, Qi Z, Yu J, Qi LS, Sebastiano V, Song JS, Ramalho-Santos M. Qin H, et al. Cell Rep. 2016 Mar 15;14(10):2301-12. doi: 10.1016/j.celrep.2016.02.036. Epub 2016 Mar 3. Cell Rep. 2016. PMID: 26947063 Free PMC article.

3

Sequence features accurately predict genome-wide MeCP2 binding in vivo.

Rube HT, Lee W, Hejna M, Chen H, Yasui DH, Hess JF, LaSalle JM, Song JS, Gong Q. Rube HT, et al. Nat Commun. 2016 Mar 24;7:11025. doi: 10.1038/ncomms11025. Nat Commun. 2016. PMID: 27008915 Free PMC article.

4

Inhibition of mTOR induces a paused pluripotent state.

Bulut-Karslioglu A, Biechele S, Jin H, Macrae TA, Hejna M, Gertsenstein M, Song JS, Ramalho-Santos M. Bulut-Karslioglu A, et al. Nature. 2016 Dec 1;540(7631):119-123. doi: 10.1038/nature20578. Epub 2016 Nov 23. Nature. 2016. PMID: 27880763 Free PMC article.

5

Local genomic features predict the distinct and overlapping binding patterns of the bHLH-Zip family oncoproteins MITF and MYC-MAX.

Hejna M, Moon WM, Cheng J, Kawakami A, Fisher DE, Song JS. Hejna M, et al. Pigment Cell Melanoma Res. 2019 Jul;32(4):500-509. doi: 10.1111/pcmr.12762. Epub 2018 Dec 21. Pigment Cell Melanoma Res. 2019. PMID: 30548162 Free PMC article.

6

Measuring DNA mechanics on the genome scale.

Basu A, Bobrovnikov DG, Qureshi Z, Kayikcioglu T, Ngo TTM, Ranjan A, Eustermann S, Cieza B, Morgan MT, Hejna M, Rube HT, Hopfner KP, Wolberger C, Song JS, Ha T. Basu A, et al. Nature. 2021 Jan;589(7842):462-467. doi: 10.1038/s41586-020-03052-3. Epub 2020 Dec 16. Nature. 2021. PMID: 33328628 Free PMC article.

7

Epigenomic tensor predicts disease subtypes and reveals constrained tumor evolution.

Leistico JR, Saini P, Futtner CR, Hejna M, Omura Y, Soni PN, Sandlesh P, Milad M, Wei JJ, Bulun S, Parker JB, Barish GD, Song JS, Chakravarti D. Leistico JR, et al. Cell Rep. 2021 Mar 30;34(13):108927. doi: 10.1016/j.celrep.2021.108927. Cell Rep. 2021. PMID: 33789109 Free PMC article.

8

Chd1 protects genome integrity at promoters to sustain hypertranscription in embryonic stem cells.

Bulut-Karslioglu A, Jin H, Kim YK, Cho B, Guzman-Ayala M, Williamson AJK, Hejna M, Stötzel M, Whetton AD, Song JS, Ramalho-Santos M. Bulut-Karslioglu A, et al. Nat Commun. 2021 Aug 11;12(1):4859. doi: 10.1038/s41467-021-25088-3. Nat Commun. 2021. PMID: 34381042 Free PMC article.

9

SOX10 Regulates Melanoma Immunogenicity through an IRF4-IRF1 Axis.

Yokoyama S, Takahashi A, Kikuchi R, Nishibu S, Lo JA, Hejna M, Moon WM, Kato S, Zhou Y, Hodi FS, Song JS, Sakurai H, Fisher DE, Hayakawa Y. Yokoyama S, et al. Cancer Res. 2021 Dec 15;81(24):6131-6141. doi: 10.1158/0008-5472.CAN-21-2078. Epub 2021 Nov 2. Cancer Res. 2021. PMID: 34728538 Free PMC article.

10

Maximum entropy methods for extracting the learned features of deep neural networks.

Finnegan A, Song JS. Finnegan A, et al. PLoS Comput Biol. 2017 Oct 30;13(10):e1005836. doi: 10.1371/journal.pcbi.1005836. eCollection 2017 Oct. PLoS Comput Biol. 2017. PMID: 29084280 Free PMC article.

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