Plotkin SS - Search Results

1

Soft Vibrational Modes Predict Breaking Events during Force-Induced Protein Unfolding.

Habibi M, Plotkin SS, Rottler J. Habibi M, et al. Among authors: plotkin ss. Biophys J. 2018 Feb 6;114(3):562-569. doi: 10.1016/j.bpj.2017.11.3781. Biophys J. 2018. PMID: 29414701 Free PMC article.

2

Determination of barrier heights and prefactors from protein folding rate data.

Plotkin SS. Plotkin SS. Biophys J. 2005 Jun;88(6):3762-9. doi: 10.1529/biophysj.104.052548. Epub 2005 Mar 11. Biophys J. 2005. PMID: 15764665 Free PMC article.

3

Minimal folding pathways for coarse-grained biopolymer fragments.

Mohazab AR, Plotkin SS. Mohazab AR, et al. Among authors: plotkin ss. Biophys J. 2008 Dec 15;95(12):5496-507. doi: 10.1529/biophysj.108.135046. Epub 2008 Sep 26. Biophys J. 2008. PMID: 18820236 Free PMC article.

4

An effective solvent theory connecting the underlying mechanisms of osmolytes and denaturants for protein stability.

Linhananta A, Hadizadeh S, Plotkin SS. Linhananta A, et al. Among authors: plotkin ss. Biophys J. 2011 Jan 19;100(2):459-68. doi: 10.1016/j.bpj.2010.11.087. Biophys J. 2011. PMID: 21244842 Free PMC article.

5

Mechanical probes of SOD1 predict systematic trends in metal and dimer affinity of ALS-associated mutants.

Das A, Plotkin SS. Das A, et al. Among authors: plotkin ss. J Mol Biol. 2013 Mar 11;425(5):850-74. doi: 10.1016/j.jmb.2012.12.022. Epub 2013 Jan 3. J Mol Biol. 2013. PMID: 23291526

6

As Simple As Possible, but Not Simpler: Exploring the Fidelity of Coarse-Grained Protein Models for Simulated Force Spectroscopy.

Habibi M, Rottler J, Plotkin SS. Habibi M, et al. Among authors: plotkin ss. PLoS Comput Biol. 2016 Nov 29;12(11):e1005211. doi: 10.1371/journal.pcbi.1005211. eCollection 2016 Nov. PLoS Comput Biol. 2016. PMID: 27898663 Free PMC article.

7

The unfolding mechanism of monomeric mutant SOD1 by simulated force spectroscopy.

Habibi M, Rottler J, Plotkin SS. Habibi M, et al. Among authors: plotkin ss. Biochim Biophys Acta Proteins Proteom. 2017 Nov;1865(11 Pt B):1631-1642. doi: 10.1016/j.bbapap.2017.06.009. Epub 2017 Jun 16. Biochim Biophys Acta Proteins Proteom. 2017. PMID: 28629863

8

pH dependent membrane binding of the Solanum tuberosum plant specific insert: An in silico study.

Dupuis JH, Yu H, Habibi M, Peng X, Plotkin SS, Wang S, Song C, Yada RY. Dupuis JH, et al. Among authors: plotkin ss. Biochim Biophys Acta Biomembr. 2018 Dec;1860(12):2608-2618. doi: 10.1016/j.bbamem.2018.10.001. Epub 2018 Oct 3. Biochim Biophys Acta Biomembr. 2018. PMID: 30291921 Free article.

9

Prediction of Misfolding-Specific Epitopes in SOD1 Using Collective Coordinates.

Peng X, Cashman NR, Plotkin SS. Peng X, et al. Among authors: plotkin ss. J Phys Chem B. 2018 Dec 13;122(49):11662-11676. doi: 10.1021/acs.jpcb.8b07680. Epub 2018 Nov 5. J Phys Chem B. 2018. PMID: 30351123

10

Misfolding-Associated Exposure of Natively Buried Residues in Mutant SOD1 Facilitates Binding to TRAF6.

Garg P, Semmler S, Baudouin C, Vande Velde C, Plotkin SS. Garg P, et al. Among authors: plotkin ss. J Mol Biol. 2022 Aug 30;434(16):167697. doi: 10.1016/j.jmb.2022.167697. Epub 2022 Jun 23. J Mol Biol. 2022. PMID: 35753527

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