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Transforming the study of organisms: Phenomic data models and knowledge bases.
Thessen AE, Walls RL, Vogt L, Singer J, Warren R, Buttigieg PL, Balhoff JP, Mungall CJ, McGuinness DL, Stucky BJ, Yoder MJ, Haendel MA. Thessen AE, et al. Among authors: yoder mj. PLoS Comput Biol. 2020 Nov 24;16(11):e1008376. doi: 10.1371/journal.pcbi.1008376. eCollection 2020 Nov. PLoS Comput Biol. 2020. PMID: 33232313 Free PMC article. Review.
Time to change how we describe biodiversity.
Deans AR, Yoder MJ, Balhoff JP. Deans AR, et al. Among authors: yoder mj. Trends Ecol Evol. 2012 Feb;27(2):78-84. doi: 10.1016/j.tree.2011.11.007. Epub 2011 Dec 19. Trends Ecol Evol. 2012. PMID: 22189359
Finding our way through phenotypes.
Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Csösz S, Cui H, Dahdul W, Das S, Dececchi TA, Dettai A, Diogo R, Druzinsky RE, Dumontier M, Franz NM, Friedrich F, Gkoutos GV, Haendel M, Harmon LJ, Hayamizu TF, He Y, Hines HM, Ibrahim N, Jackson LM, Jaiswal P, James-Zorn C, Köhler S, Lecointre G, Lapp H, Lawrence CJ, Le Novère N, Lundberg JG, Macklin J, Mast AR, Midford PE, Mikó I, Mungall CJ, Oellrich A, Osumi-Sutherland D, Parkinson H, Ramírez MJ, Richter S, Robinson PN, Ruttenberg A, Schulz KS, Segerdell E, Seltmann KC, Sharkey MJ, Smith AD, Smith B, Specht CD, Squires RB, Thacker RW, Thessen A, Fernandez-Triana J, Vihinen M, Vize PD, Vogt L, Wall CE, Walls RL, Westerfeld M, Wharton RA, Wirkner CS, Woolley JB, Yoder MJ, Zorn AM, Mabee P. Deans AR, et al. Among authors: yoder mj. PLoS Biol. 2015 Jan 6;13(1):e1002033. doi: 10.1371/journal.pbio.1002033. eCollection 2015 Jan. PLoS Biol. 2015. PMID: 25562316 Free PMC article.
Developing a vocabulary and ontology for modeling insect natural history data: example data, use cases, and competency questions.
Stucky BJ, Balhoff JP, Barve N, Barve V, Brenskelle L, Brush MH, Dahlem GA, Gilbert JDJ, Kawahara AY, Keller O, Lucky A, Mayhew PJ, Plotkin D, Seltmann KC, Talamas E, Vaidya G, Walls R, Yoder M, Zhang G, Guralnick R. Stucky BJ, et al. Biodivers Data J. 2019 Mar 13;7:e33303. doi: 10.3897/BDJ.7.e33303. eCollection 2019. Biodivers Data J. 2019. PMID: 30918448 Free PMC article.
Formalizing Invertebrate Morphological Data: A Descriptive Model for Cuticle-Based Skeleto-Muscular Systems, an Ontology for Insect Anatomy, and their Potential Applications in Biodiversity Research and Informatics.
Girón JC, Tarasov S, González Montaña LA, Matentzoglu N, Smith AD, Koch M, Boudinot BE, Bouchard P, Burks R, Vogt L, Yoder M, Osumi-Sutherland D, Friedrich F, Beutel RG, Mikó I. Girón JC, et al. Syst Biol. 2023 Nov 1;72(5):1084-1100. doi: 10.1093/sysbio/syad025. Syst Biol. 2023. PMID: 37094905
A gross anatomy ontology for hymenoptera.
Yoder MJ, Mikó I, Seltmann KC, Bertone MA, Deans AR. Yoder MJ, et al. PLoS One. 2010 Dec 29;5(12):e15991. doi: 10.1371/journal.pone.0015991. PLoS One. 2010. PMID: 21209921 Free PMC article.
30 results