Roux S - Search Results

1

VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses.

Guo J, Bolduc B, Zayed AA, Varsani A, Dominguez-Huerta G, Delmont TO, Pratama AA, Gazitúa MC, Vik D, Sullivan MB, Roux S. Guo J, et al. Among authors: roux s. Microbiome. 2021 Feb 1;9(1):37. doi: 10.1186/s40168-020-00990-y. Microbiome. 2021. PMID: 33522966 Free PMC article.

2

Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics.

Roux S, Hawley AK, Torres Beltran M, Scofield M, Schwientek P, Stepanauskas R, Woyke T, Hallam SJ, Sullivan MB. Roux S, et al. Elife. 2014 Aug 29;3:e03125. doi: 10.7554/eLife.03125. Elife. 2014. PMID: 25171894 Free PMC article.

3

Genomic characteristics and environmental distributions of the uncultivated Far-T4 phages.

Roux S, Enault F, Ravet V, Pereira O, Sullivan MB. Roux S, et al. Front Microbiol. 2015 Mar 16;6:199. doi: 10.3389/fmicb.2015.00199. eCollection 2015. Front Microbiol. 2015. PMID: 25852662 Free PMC article.

4

Ocean plankton. Patterns and ecological drivers of ocean viral communities.

Brum JR, Ignacio-Espinoza JC, Roux S, Doulcier G, Acinas SG, Alberti A, Chaffron S, Cruaud C, de Vargas C, Gasol JM, Gorsky G, Gregory AC, Guidi L, Hingamp P, Iudicone D, Not F, Ogata H, Pesant S, Poulos BT, Schwenck SM, Speich S, Dimier C, Kandels-Lewis S, Picheral M, Searson S; Tara Oceans Coordinators; Bork P, Bowler C, Sunagawa S, Wincker P, Karsenti E, Sullivan MB. Brum JR, et al. Among authors: roux s. Science. 2015 May 22;348(6237):1261498. doi: 10.1126/science.1261498. Science. 2015. PMID: 25999515 Free article.

5

VirSorter: mining viral signal from microbial genomic data.

Roux S, Enault F, Hurwitz BL, Sullivan MB. Roux S, et al. PeerJ. 2015 May 28;3:e985. doi: 10.7717/peerj.985. eCollection 2015. PeerJ. 2015. PMID: 26038737 Free PMC article.

6

Viral dark matter and virus-host interactions resolved from publicly available microbial genomes.

Roux S, Hallam SJ, Woyke T, Sullivan MB. Roux S, et al. Elife. 2015 Jul 22;4:e08490. doi: 10.7554/eLife.08490. Elife. 2015. PMID: 26200428 Free PMC article.

7

Illuminating structural proteins in viral "dark matter" with metaproteomics.

Brum JR, Ignacio-Espinoza JC, Kim EH, Trubl G, Jones RM, Roux S, VerBerkmoes NC, Rich VI, Sullivan MB. Brum JR, et al. Among authors: roux s. Proc Natl Acad Sci U S A. 2016 Mar 1;113(9):2436-41. doi: 10.1073/pnas.1525139113. Epub 2016 Feb 16. Proc Natl Acad Sci U S A. 2016. PMID: 26884177 Free PMC article.

8

Regulation of infection efficiency in a globally abundant marine Bacteriodetes virus.

Howard-Varona C, Roux S, Dore H, Solonenko NE, Holmfeldt K, Markillie LM, Orr G, Sullivan MB. Howard-Varona C, et al. Among authors: roux s. ISME J. 2017 Jan;11(1):284-295. doi: 10.1038/ismej.2016.81. Epub 2016 May 17. ISME J. 2017. PMID: 27187794 Free PMC article.

9

Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses.

Enault F, Briet A, Bouteille L, Roux S, Sullivan MB, Petit MA. Enault F, et al. Among authors: roux s. ISME J. 2017 Jan;11(1):237-247. doi: 10.1038/ismej.2016.90. Epub 2016 Jun 21. ISME J. 2017. PMID: 27326545 Free PMC article.

10

iVirus: facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure.

Bolduc B, Youens-Clark K, Roux S, Hurwitz BL, Sullivan MB. Bolduc B, et al. Among authors: roux s. ISME J. 2017 Jan;11(1):7-14. doi: 10.1038/ismej.2016.89. Epub 2016 Jul 15. ISME J. 2017. PMID: 27420028 Free PMC article.

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