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Identification of LINE retrotransposons and long non-coding RNAs expressed in the octopus brain.
Petrosino G, Ponte G, Volpe M, Zarrella I, Ansaloni F, Langella C, Di Cristina G, Finaurini S, Russo MT, Basu S, Musacchia F, Ristoratore F, Pavlinic D, Benes V, Ferrante MI, Albertin C, Simakov O, Gustincich S, Fiorito G, Sanges R. Petrosino G, et al. Among authors: simakov o. BMC Biol. 2022 May 18;20(1):116. doi: 10.1186/s12915-022-01303-5. BMC Biol. 2022. PMID: 35581640 Free PMC article.
A chromosome-scale epigenetic map of the Hydra genome reveals conserved regulators of cell state.
Cazet JF, Siebert S, Little HM, Bertemes P, Primack AS, Ladurner P, Achrainer M, Fredriksen MT, Moreland RT, Singh S, Zhang S, Wolfsberg TG, Schnitzler CE, Baxevanis AD, Simakov O, Hobmayer B, Juliano CE. Cazet JF, et al. Among authors: simakov o. Genome Res. 2023 Feb;33(2):283-298. doi: 10.1101/gr.277040.122. Epub 2023 Jan 13. Genome Res. 2023. PMID: 36639202 Free PMC article.
The genome of the colonial hydroid Hydractinia reveals that their stem cells use a toolkit of evolutionarily shared genes with all animals.
Schnitzler CE, Chang ES, Waletich J, Quiroga-Artigas G, Wong WY, Nguyen AD, Barreira SN, Doonan LB, Gonzalez P, Koren S, Gahan JM, Sanders SM, Bradshaw B, DuBuc TQ, Febrimarsa, de Jong D, Nawrocki EP, Larson A, Klasfeld S, Gornik SG, Moreland RT, Wolfsberg TG, Phillippy AM, Mullikin JC, Simakov O, Cartwright P, Nicotra M, Frank U, Baxevanis AD. Schnitzler CE, et al. Among authors: simakov o. Genome Res. 2024 Apr 25;34(3):498-513. doi: 10.1101/gr.278382.123. Genome Res. 2024. PMID: 38508693 Free PMC article.
The survey and reference assisted assembly of the Octopus vulgaris genome.
Zarrella I, Herten K, Maes GE, Tai S, Yang M, Seuntjens E, Ritschard EA, Zach M, Styfhals R, Sanges R, Simakov O, Ponte G, Fiorito G. Zarrella I, et al. Among authors: simakov o. Sci Data. 2019 Apr 1;6(1):13. doi: 10.1038/s41597-019-0017-6. Sci Data. 2019. PMID: 30931949 Free PMC article.
89 results