Plotkin SS - Search Results

1

Ensemble Generation for Linear and Cyclic Peptides Using a Reservoir Replica Exchange Molecular Dynamics Implementation in GROMACS.

Hsueh SCC, Aina A, Plotkin SS. Hsueh SCC, et al. Among authors: plotkin ss. J Phys Chem B. 2022 Dec 15;126(49):10384-10399. doi: 10.1021/acs.jpcb.2c05470. Epub 2022 Nov 21. J Phys Chem B. 2022. PMID: 36410027

2

Protein Transfer Free Energy Obeys Entropy-Enthalpy Compensation.

Mills EA, Plotkin SS. Mills EA, et al. Among authors: plotkin ss. J Phys Chem B. 2015 Nov 5;119(44):14130-44. doi: 10.1021/acs.jpcb.5b09219. Epub 2015 Oct 26. J Phys Chem B. 2015. PMID: 26423005

3

Prediction of Misfolding-Specific Epitopes in SOD1 Using Collective Coordinates.

Peng X, Cashman NR, Plotkin SS. Peng X, et al. Among authors: plotkin ss. J Phys Chem B. 2018 Dec 13;122(49):11662-11676. doi: 10.1021/acs.jpcb.8b07680. Epub 2018 Nov 5. J Phys Chem B. 2018. PMID: 30351123

4

First Principles Calculation of Protein-Protein Dimer Affinities of ALS-Associated SOD1 Mutants.

Hsueh SCC, Nijland M, Peng X, Hilton B, Plotkin SS. Hsueh SCC, et al. Among authors: plotkin ss. Front Mol Biosci. 2022 Mar 24;9:845013. doi: 10.3389/fmolb.2022.845013. eCollection 2022. Front Mol Biosci. 2022. PMID: 35402516 Free PMC article.

5

Optimizing Epitope Conformational Ensembles Using α-Synuclein Cyclic Peptide "Glycindel" Scaffolds: A Customized Immunogen Method for Generating Oligomer-Selective Antibodies for Parkinson's Disease.

Hsueh SCC, Aina A, Roman AY, Cashman NR, Peng X, Plotkin SS. Hsueh SCC, et al. Among authors: plotkin ss. ACS Chem Neurosci. 2022 Aug 3;13(15):2261-2280. doi: 10.1021/acschemneuro.1c00567. Epub 2022 Jul 15. ACS Chem Neurosci. 2022. PMID: 35840132 Free PMC article.

6

Rational Generation of Monoclonal Antibodies Selective for Pathogenic Forms of Alpha-Synuclein.

Gibbs E, Zhao B, Roman A, Plotkin SS, Peng X, Hsueh SCC, Aina A, Wang J, Shyu C, Yip CK, Nam SE, Kaplan JM, Cashman NR. Gibbs E, et al. Among authors: plotkin ss. Biomedicines. 2022 Sep 2;10(9):2168. doi: 10.3390/biomedicines10092168. Biomedicines. 2022. PMID: 36140270 Free PMC article.

7

PROTHON: A Local Order Parameter-Based Method for Efficient Comparison of Protein Ensembles.

Aina A, Hsueh SCC, Plotkin SS. Aina A, et al. Among authors: plotkin ss. J Chem Inf Model. 2023 Jun 12;63(11):3453-3461. doi: 10.1021/acs.jcim.3c00145. Epub 2023 May 13. J Chem Inf Model. 2023. PMID: 37178169

8

De Novo Design of a β-Helix Tau Protein Scaffold: An Oligomer-Selective Vaccine Immunogen Candidate for Alzheimer's Disease.

Aina A, Hsueh SCC, Gibbs E, Peng X, Cashman NR, Plotkin SS. Aina A, et al. Among authors: plotkin ss. ACS Chem Neurosci. 2023 Aug 2;14(15):2603-2617. doi: 10.1021/acschemneuro.3c00007. Epub 2023 Jul 17. ACS Chem Neurosci. 2023. PMID: 37458595

9

Targeting RACK1 to alleviate TDP-43 and FUS proteinopathy-mediated suppression of protein translation and neurodegeneration.

Zhao B, Cowan CM, Coutts JA, Christy DD, Saraph A, Hsueh SCC, Plotkin SS, Mackenzie IR, Kaplan JM, Cashman NR. Zhao B, et al. Among authors: plotkin ss. Acta Neuropathol Commun. 2023 Dec 18;11(1):200. doi: 10.1186/s40478-023-01705-8. Acta Neuropathol Commun. 2023. PMID: 38111057 Free PMC article.

10

Cyclization Scaffolding for Improved Vaccine Immunogen Stability: Application to Tau Protein in Alzheimer's Disease.

Hsueh SCC, Nijland M, Aina A, Plotkin SS. Hsueh SCC, et al. Among authors: plotkin ss. J Chem Inf Model. 2024 Mar 25;64(6):2035-2044. doi: 10.1021/acs.jcim.3c01556. Epub 2024 Mar 1. J Chem Inf Model. 2024. PMID: 38427576

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