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Page 1
StarPepWeb: an integrative, graph-based resource for bioactive peptides.
López C, Cárdenas R, Aguilera-Mendoza L, Agüero-Chapin G, Martínez-Rios F, García-Jacas CR, Pérez-Pérez N, Marrero-Ponce Y. López C, et al. Among authors: martinez rios f. Bioinform Adv. 2025 Oct 16;5(1):vbaf261. doi: 10.1093/bioadv/vbaf261. eCollection 2025. Bioinform Adv. 2025. PMID: 41394083 Free PMC article.
Half-Space Proximal Networks (HSPNs): A Proxy for Multi-Query Similarity Searching Models Predicting Tumor-Homing Peptides.
Romero M, Marrero-Ponce Y, Martinez-Rios F, Agüero-Chapin G, Aguilera-Mendoza L, Chavez E, Márquez EA, Pérez-Pérez N, Mora JR, Contreras-Torres E, Barigye SJ. Romero M, et al. Among authors: martinez rios f. ACS Omega. 2025 Nov 5;10(45):54389-54404. doi: 10.1021/acsomega.5c07055. eCollection 2025 Nov 18. ACS Omega. 2025. PMID: 41280784 Free PMC article.
In Silico Identification of Potential Clovibactin-like Antibiotics Binding to Unique Cell Wall Precursors in Diverse Gram-Positive Bacterial Strains.
Sierra-Hernandez O, Saurith-Coronell O, Rodríguez-Macías J, Márquez E, Mora JR, Paz JL, Flores-Sumoza M, Mendoza-Mendoza A, Flores-Morales V, Marrero-Ponce Y, Barigye SJ, Martinez-Rios F. Sierra-Hernandez O, et al. Among authors: martinez rios f. Int J Mol Sci. 2025 Feb 18;26(4):1724. doi: 10.3390/ijms26041724. Int J Mol Sci. 2025. PMID: 40004190 Free PMC article.
Biological Implications of the Intrinsic Deformability of Human Acetylcholinesterase Induced by Diverse Compounds: A Computational Study.
Alvarado YJ, González-Paz L, Paz JL, Loroño-González MA, Santiago Contreras J, Lossada C, Vivas A, Marrero-Ponce Y, Martinez-Rios F, Rodriguez-Lugo P, Balladores Y, Vera-Villalobos J. Alvarado YJ, et al. Among authors: martinez rios f. Biology (Basel). 2024 Dec 19;13(12):1065. doi: 10.3390/biology13121065. Biology (Basel). 2024. PMID: 39765732 Free PMC article.
Macromolecular interaction mechanism of the bacteriocin EntDD14 with the receptor binding domain (RBD) for the inhibition of SARS-CoV-2 and the JN.1 variant: Biomedical study based on elastic networks, stochastic Markov models, and macromolecular volumetric analysis.
Molina LM, Pichazaca MEA, Padilla JIY, Calle MEP, Pinos KMY, Urdaneta AC, Lossada C, Marrero-Ponce Y, Martinez-Rios F, Alvarado YJ, Pérez A, González-Paz L. Molina LM, et al. Among authors: martinez rios f. Biophys Chem. 2025 Mar;318:107388. doi: 10.1016/j.bpc.2024.107388. Epub 2024 Dec 29. Biophys Chem. 2025. PMID: 39765094
Development of a new reference material for accurate measurements of lithium in Li-clays.
Quiroz Garduño LD, Mora García TD, Domínguez AS, Valle Moya E, Martínez Ríos FJ, Del Rocío Arvizu Torres M, Amezcua Vergara M, Hernández Leos R, Hernández Rodríguez C, Pérez García MR, de Jesús Pérez Bueno J. Quiroz Garduño LD, et al. Among authors: martinez rios fj. Sci Rep. 2024 Sep 5;14(1):20753. doi: 10.1038/s41598-024-71799-0. Sci Rep. 2024. PMID: 39237591 Free PMC article.
Innovative Alignment-Based Method for Antiviral Peptide Prediction.
de Llano García D, Marrero-Ponce Y, Agüero-Chapin G, Ferri FJ, Antunes A, Martinez-Rios F, Rodríguez H. de Llano García D, et al. Among authors: martinez rios f. Antibiotics (Basel). 2024 Aug 14;13(8):768. doi: 10.3390/antibiotics13080768. Antibiotics (Basel). 2024. PMID: 39200068 Free PMC article.
Biophysical Analysis of Potential Inhibitors of SARS-CoV-2 Cell Recognition and Their Effect on Viral Dynamics in Different Cell Types: A Computational Prediction from In Vitro Experimental Data.
González-Paz L, Lossada C, Hurtado-León ML, Vera-Villalobos J, Paz JL, Marrero-Ponce Y, Martinez-Rios F, Alvarado YJ. González-Paz L, et al. Among authors: martinez rios f. ACS Omega. 2024 Feb 14;9(8):8923-8939. doi: 10.1021/acsomega.3c06968. eCollection 2024 Feb 27. ACS Omega. 2024. PMID: 38434903 Free PMC article.
Rethinking the applicability domain analysis in QSAR models.
Mora JR, Marquez EA, Pérez-Pérez N, Contreras-Torres E, Perez-Castillo Y, Agüero-Chapin G, Martinez-Rios F, Marrero-Ponce Y, Barigye SJ. Mora JR, et al. Among authors: martinez rios f. J Comput Aided Mol Des. 2024 Feb 14;38(1):9. doi: 10.1007/s10822-024-00550-8. J Comput Aided Mol Des. 2024. PMID: 38351144
17 results