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Evidence for a lipofibroblast-to-Cthrc1 + myofibroblast reversible switch during the development and resolution of lung fibrosis in young mice.
Lingampally A, Truchi M, Mauduit O, Delcroix V, Vasquez-Pacheco E, Gautier-Isola M, Chu X, Khadim A, Chao CM, Zabihi M, Taghizadeh S, Rivetti S, Marega M, Moiseenko A, Hadzic S, Vazquez-Armendariz AI, Herold S, Günther S, Millar-Büchner P, Koepke J, Samakovlis C, Wilhelm J, Bartkuhn M, Braun T, Weissmann N, Zhang J, Wygrecka M, Makarenkova HP, Günther A, Seeger W, Chen C, El Agha E, Mari B, Bellusci S. Lingampally A, et al. Among authors: samakovlis c. Eur Respir J. 2025 Feb 6;65(2):2300482. doi: 10.1183/13993003.00482-2023. Print 2025 Feb. Eur Respir J. 2025. PMID: 39401861 Free PMC article.
GLI1+ cells are a source of repair-supportive mesenchymal cells (RSMCs) during airway epithelial regeneration.
Chu X, Lingampally A, Moiseenko A, Kheirollahi V, Vazquez-Armendariz AI, Koepke J, Khadim A, Kiliaris G, Shahriari Felordi M, Zabihi M, Shalashova I, Alexopoulos I, Günther S, Lebrigand K, Truchi M, Günther A, Braun T, Mari B, Samakovlis C, Li X, Seeger W, Herold S, Zhang JS, Bellusci S, El Agha E. Chu X, et al. Among authors: samakovlis c. Cell Mol Life Sci. 2022 Nov 5;79(11):581. doi: 10.1007/s00018-022-04599-2. Cell Mol Life Sci. 2022. PMID: 36333491 Free PMC article.
Unraveling Alveolar Fibroblast and Activated Myofibroblast Heterogeneity and Differentiation Trajectories During Lung Fibrosis Development and Resolution in Young and Old Mice.
Lingampally A, Truchi M, Shi X, Zhou Y, Vasquez-Pacheco E, Panagiotidis GD, Hadzic S, Koepke J, Vazquez-Armendariz AI, Herold S, Samakovlis C, Cabrera-Fuentes HA, Chu X, Seeger W, Zhang JS, El Agha E, Mari B, Bellusci S, Chen C. Lingampally A, et al. Among authors: samakovlis c. Aging Cell. 2025 May;24(5):e14503. doi: 10.1111/acel.14503. Epub 2025 Feb 13. Aging Cell. 2025. PMID: 39945330 Free PMC article.
Spatial single-cell atlas reveals regional variations in healthy and diseased human lung.
Firsova AB, Marco Salas S, Kuemmerle LB, Abalo XM, Sountoulidis A, Larsson L, Mahbubani KT, Theelke J, Andrusivova Z, Alonso Galicia L, Liontos A, Balassa T, Kovacs F, Horvath P, Chen Y, Gote-Schniering J, Stoleriu MG, Behr J, Meyer KB, Timens W, Schiller HB, Luecken MD, Theis FJ, Lundeberg J, Nilsson M, Nawijn MC, Samakovlis C. Firsova AB, et al. Among authors: samakovlis c. Nat Commun. 2025 Nov 5;16(1):9745. doi: 10.1038/s41467-025-65704-0. Nat Commun. 2025. PMID: 41193468 Free PMC article.
Probe set selection for targeted spatial transcriptomics.
Kuemmerle LB, Luecken MD, Firsova AB, Barros de Andrade E Sousa L, Straßer L, Mekki II, Campi F, Heumos L, Shulman M, Beliaeva V, Hediyeh-Zadeh S, Schaar AC, Mahbubani KT, Sountoulidis A, Balassa T, Kovacs F, Horvath P, Piraud M, Ertürk A, Samakovlis C, Theis FJ. Kuemmerle LB, et al. Among authors: samakovlis c. Nat Methods. 2024 Dec;21(12):2260-2270. doi: 10.1038/s41592-024-02496-z. Epub 2024 Nov 18. Nat Methods. 2024. PMID: 39558096 Free PMC article.
High-parametric protein maps reveal the spatial organization in early-developing human lung.
Sariyar S, Sountoulidis A, Hansen JN, Marco Salas S, Mardamshina M, Martinez Casals A, Ballllosera Navarro F, Andrusivova Z, Li X, Czarnewski P, Lundeberg J, Linnarsson S, Nilsson M, Sundström E, Samakovlis C, Lundberg E, Ayoglu B. Sariyar S, et al. Among authors: samakovlis c. Nat Commun. 2024 Oct 30;15(1):9381. doi: 10.1038/s41467-024-53752-x. Nat Commun. 2024. PMID: 39477961 Free PMC article.
GLI1+ Cells Contribute to Vascular Remodeling in Pulmonary Hypertension.
Chu X, Kheirollahi V, Lingampally A, Chelladurai P, Valasarajan C, Vazquez-Armendariz AI, Hadzic S, Khadim A, Pak O, Rivetti S, Wilhelm J, Bartkuhn M, Crnkovic S, Moiseenko A, Heiner M, Kraut S, Atefi LS, Koepke J, Valente G, Ruppert C, Braun T, Samakovlis C, Alexopoulos I, Looso M, Chao CM, Herold S, Seeger W, Kwapiszewska G, Huang X, Zhang JS, Pullamsetti SS, Weissmann N, Li X, El Agha E, Bellusci S. Chu X, et al. Among authors: samakovlis c. Circ Res. 2024 May 24;134(11):e133-e149. doi: 10.1161/CIRCRESAHA.123.323736. Epub 2024 Apr 19. Circ Res. 2024. PMID: 38639105 Free article.
Sfrp1 inhibits lung fibroblast invasion during transition to injury-induced myofibroblasts.
Mayr CH, Sengupta A, Asgharpour S, Ansari M, Pestoni JC, Ogar P, Angelidis I, Liontos A, Rodriguez-Castillo JA, Lang NJ, Strunz M, Porras-Gonzalez D, Gerckens M, De Sadeleer LJ, Oehrle B, Viteri-Alvarez V, Fernandez IE, Tallquist M, Irmler M, Beckers J, Eickelberg O, Stoleriu GM, Behr J, Kneidinger N, Wuyts WA, Wasnick RM, Yildirim AÖ, Ahlbrecht K, Morty RE, Samakovlis C, Theis FJ, Burgstaller G, Schiller HB. Mayr CH, et al. Among authors: samakovlis c. Eur Respir J. 2024 Feb 8;63(2):2301326. doi: 10.1183/13993003.01326-2023. Print 2024 Feb. Eur Respir J. 2024. PMID: 38212077 Free PMC article.
81 results