Probst AJ - Search Results

1

Systematic evaluation of protein extraction for metaproteomic analysis of marine sediment with high clay content.

Ostrzinski A, Kunath BJ, Soares AR, Laczny CC, Halder R, Kallmeyer J, di Primio R, Wilmes P, Probst AJ, Trautwein-Schult A, Becher D. Ostrzinski A, et al. Among authors: probst aj. ISME Commun. 2025 May 22;5(1):ycaf074. doi: 10.1093/ismeco/ycaf074. eCollection 2025 Jan. ISME Commun. 2025. PMID: 40568302 Free PMC article.

2

Functional prediction of proteins from the human gut archaeome.

Novikova PV, Bhanu Busi S, Probst AJ, May P, Wilmes P. Novikova PV, et al. Among authors: probst aj. ISME Commun. 2024 Jan 10;4(1):ycad014. doi: 10.1093/ismeco/ycad014. eCollection 2024 Jan. ISME Commun. 2024. PMID: 38486809 Free PMC article.

3

Time-series metaproteogenomics of a high-CO₂ aquifer reveals active viruses with fluctuating abundances and broad host ranges.

Moore CJ, Bornemann TLV, Figueroa-Gonzalez PA, Esser SP, Moraru C, Soares AR, Hinzke T, Trautwein-Schult A, Maaß S, Becher D, Starke J, Plewka J, Rothe L, Probst AJ. Moore CJ, et al. Among authors: probst aj. Microlife. 2024 May 20;5:uqae011. doi: 10.1093/femsml/uqae011. eCollection 2024. Microlife. 2024. PMID: 38855384 Free PMC article.

4

Inferring replication states of bacteria and viruses in enrichment cultures via long-read sequencing.

Simon SA, Soares AR, Bornemann TLV, Lange A, Griesdorn L, Fuentes A, Dieckmann M, Krok BA, Ruff SE, Hügler M, Moraru C, Probst AJ. Simon SA, et al. Among authors: probst aj. ISME Commun. 2025 Mar 5;5(1):ycaf041. doi: 10.1093/ismeco/ycaf041. eCollection 2025 Jan. ISME Commun. 2025. PMID: 40182062 Free PMC article.

5

Dancing the Nanopore limbo - Nanopore metagenomics from small DNA quantities for bacterial genome reconstruction.

Simon SA, Schmidt K, Griesdorn L, Soares AR, Bornemann TLV, Probst AJ. Simon SA, et al. Among authors: probst aj. BMC Genomics. 2023 Dec 1;24(1):727. doi: 10.1186/s12864-023-09853-w. BMC Genomics. 2023. PMID: 38041056 Free PMC article.

6

Stable-isotope probing combined with amplicon sequencing and metagenomics identifies key bacterial benzene degraders under microaerobic conditions.

Táncsics A, Bedics A, Banerjee S, Soares A, Baka E, Probst AJ, Kriszt B. Táncsics A, et al. Among authors: probst aj. Biol Futur. 2024 Sep;75(3):301-311. doi: 10.1007/s42977-024-00232-4. Epub 2024 Jul 24. Biol Futur. 2024. PMID: 39044043

7

Environmental activity-based protein profiling for function-driven enzyme discovery from natural communities.

Ninck S, Klaus T, Kochetkova TV, Esser SP, Sewald L, Kaschani F, Bräsen C, Probst AJ, Kublanov IV, Siebers B, Kaiser M. Ninck S, et al. Among authors: probst aj. Environ Microbiome. 2024 Jun 3;19(1):36. doi: 10.1186/s40793-024-00577-2. Environ Microbiome. 2024. PMID: 38831353 Free PMC article.

8

A metatranscriptomic exploration of fungal and bacterial contributions to allochthonous leaf litter decomposition in the streambed.

Deep A, Sieber G, Boden L, David GM, Baikova D, Buchner D, Starke J, Stach TL, Reinders T, Hadžiomerović U, Beszteri S, Probst AJ, Boenigk J, Beisser D. Deep A, et al. Among authors: probst aj. PeerJ. 2025 Apr 25;13:e19120. doi: 10.7717/peerj.19120. eCollection 2025. PeerJ. 2025. PMID: 40297467 Free PMC article.

9

Exploring the efficacy of metabarcoding and non-target screening for detecting treated wastewater.

Sieber G, Drees F, Shah M, Stach TL, Hohrenk-Danzouma L, Bock C, Vosough M, Schumann M, Sures B, Probst AJ, Schmidt TC, Beisser D, Boenigk J. Sieber G, et al. Among authors: probst aj. Sci Total Environ. 2023 Dec 10;903:167457. doi: 10.1016/j.scitotenv.2023.167457. Epub 2023 Sep 28. Sci Total Environ. 2023. PMID: 37777125 Free article.

10

NCBench: providing an open, reproducible, transparent, adaptable, and continuous benchmark approach for DNA-sequencing-based variant calling.

Hanssen F, Gabernet G, Bäuerle F, Stöcker B, Wiegand F, Smith NH, Mertes C, Neogi AG, Brandhoff L, Ossowski A, Altmueller J, Becker K, Petzold A, Sturm M, Stöcker T, Sivalingam S, Brand F, Schmidt A, Buness A, Probst AJ, Motameny S, Köster J. Hanssen F, et al. Among authors: probst aj. F1000Res. 2024 Sep 12;12:1125. doi: 10.12688/f1000research.140344.2. eCollection 2023. F1000Res. 2024. PMID: 39345270 Free PMC article.

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