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Page 1
Industrialization drives convergent microbial and physiological shifts in the human metaorganism.
Poyet M, Rühlemann M, Schaan AP, Ma Y, Moitinho-Silva L, Wacker EM, Jebens H, Patel L, Nguyen LTT, Zimmer A, Plichta D, McDonald D, Stevens C, Agyei A, Afihene MY, Asibey SO, Awuku YA, Badiane AS, Ching LS, Corzett C, Deme A, Dominguez-Rodrigo M, Duah A, Fezeu A, Froment A, Gibbons S, Girard C, Hooker J, Ibrahim F, Iqaluk D, Juimo V, Kettunen P, Lafosse S, Lango-Yaya E, Lehtimäki J, Lim YAL, Mabulla A, Mahachai V, Mohamed RS, Moniz K, Mwikarago IE, Nartey YA, Ndiaye D, Noel M, Onyekwere C, Pin TM, Plymoth A, Roberts L, Ruokolainen L, Rusine J, Segurel L, Shapiro BJ, Sigwazi S, Sistiaga A, Valles K, Vatanen T, Vilaichone RK, Rosenstiel P, Baines J, Franke A, Ellinghaus D, Knight R, Daly M, Xavier RJ, Alm EJ, Groussin M. Poyet M, et al. Among authors: patel l. bioRxiv [Preprint]. 2025 Oct 20:2025.10.20.683358. doi: 10.1101/2025.10.20.683358. bioRxiv. 2025. PMID: 41280098 Free PMC article. Preprint.
Environmental and Maternal Imprints on Infant Gut Metabolic Programming.
Kvitne KE, Allaband C, Onuora JC, Perry D, Zuffa S, Patel L, Charron-Lamoureux V, Mohanty I, Sejane K, Patan A, Al Mahmud A, Ahmed T, Bassani DG, González A, Hamer DH, Haque R, Ho B, Hossain MI, Islam MS, McDonald D, Pell LG, Qamar H, Roth DE, Saha S, Shah PS, Siddiqui MM, Sarker SA, Sultana S, Thomas S, Burnett LA, Tsunoda SM, Bode L, Dorrestein PC, Knight R. Kvitne KE, et al. Among authors: patel l. bioRxiv [Preprint]. 2025 Jul 24:2025.07.24.666662. doi: 10.1101/2025.07.24.666662. bioRxiv. 2025. Update in: Cell Host Microbe. 2025 Dec 10;33(12):2130-2147.e7. doi: 10.1016/j.chom.2025.11.002. PMID: 40777448 Free PMC article. Updated. Preprint.
A searchable metadata network graph for microbiome metabolomics.
Charron-Lamoureux V, Xing S, Patan A, Walker C, Monter RA, Abiead YE, Zhao HN, Patel L, Weng Y, Gonzalez A, Ackermann G, Deleray V, Gandhi V, Mohanty I, Caraballo-Rodriguez AM, Kvitne KE, Zuffa S, Norman A, Martin A, Chin L, Paz-Gonzalez R, Sala-Climent M, Suryawinata N, Zemlin J, Gouda H, Hu Z, Norton G, Rajkumar P, Molina AJ, Bergstrom J, Pinner M, Giddings S, Aron AT, Liang L, Dahesh S, Lamichhane S, Reilly ER, Nizet V, Skrip A, Lukowski AL, Shore SFH, Ghoshal S, Engevik MA, Horvath TD, Renwick S, Agongo J, Marco ML, Mazmanian SK, Wang M, Yang H, McDonald D, Guma M, Stegmann E, Hernandez Perez N, Stincone P, Kemen E, Pakkir Shah AK, Bode L, Petras D, Siegel D, Raffatellu M, Patterson AD, Devkota S, Jinich A, Knight R, Zengler K, Dorrestein PC. Charron-Lamoureux V, et al. Among authors: patel l. bioRxiv [Preprint]. 2026 Feb 5:2026.02.04.703849. doi: 10.64898/2026.02.04.703849. bioRxiv. 2026. PMID: 41676651 Free PMC article. Preprint.
Incomplete human reference genomes can drive false sex biases and expose patient-identifying information in metagenomic data.
Guccione C, Patel L, Tomofuji Y, McDonald D, Gonzalez A, Sepich-Poore GD, Sonehara K, Zakeri M, Chen Y, Dilmore AH, Damle N, Baranzini SE, Nakatsuji T, Gallo RL, Langmead B, Okada Y, Curtius K, Knight R. Guccione C, et al. Among authors: patel l. Res Sq [Preprint]. 2024 Oct 23:rs.3.rs-4721159. doi: 10.21203/rs.3.rs-4721159/v1. Res Sq. 2024. Update in: Nat Commun. 2025 Jan 18;16(1):825. doi: 10.1038/s41467-025-56077-5. PMID: 39502785 Free PMC article. Updated. Preprint.
Versatile wastewater monitoring of pathogens and antimicrobial resistance enabled by metatranscriptomics and long-read metagenomics.
Knight R, Din MO, Salido R, Wright G, Brennan C, Ambre M, Hansen L, Boyer T, Cao J, Oles R, Patel L, Weng Y, McDonald D, Bhute S, Solini G, Karthikeyan S, Humphrey G, DeHoff P, Kralicek S, Levy J, Zeller M, Hecht G, Laurent L, Yeo G, Andersen K, Bartko A. Knight R, et al. Among authors: patel l. Res Sq [Preprint]. 2025 Sep 10:rs.3.rs-7492978. doi: 10.21203/rs.3.rs-7492978/v1. Res Sq. 2025. PMID: 40964040 Free PMC article. Preprint.
Landscape of caregiver decisional regret.
Araya-Colvin J, Calderon T, Patel LR, Younoszai MA, Nguyen AL, Arteaga R, Plonkowski AT, Jewell TE, Ettinger RE, Morrison SD. Araya-Colvin J, et al. Among authors: patel lr. J Pediatr Surg. 2025 Dec 30:162902. doi: 10.1016/j.jpedsurg.2025.162902. Online ahead of print. J Pediatr Surg. 2025. PMID: 41478561 No abstract available.
Impact of COVID-19 non-pharmaceutical interventions on bacterial infections in children: an international electronic health record-based study.
Zachariasse JM, Gutiérrez-Sacristán A, Makwana S, Li X, Bhatnagar S, Hanauer DA, Kainth MK, Morris M, Rubio-Mayo P, Sáez C, Shah MA, Aronow BJ, Badenes R, Cai T, Garcia Barrio N, Issitt RW, Mandl KD, Milani GP, Moshal K, Newburger JW, Omenn GS, Romero-Garcia N, Sperotto F, Spiridou A, Visweswaran S, Xia Z, Bourgeois FT, Avillach P; Consortium for Clinical Characterization of COVID-19 by EHR (4CE). Zachariasse JM, et al. BMJ Public Health. 2025 Dec 7;3(2):e002671. doi: 10.1136/bmjph-2025-002671. eCollection 2025. BMJ Public Health. 2025. PMID: 41394022 Free PMC article.
724 results