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Community Curation of Microbial Metabolites Enables Biological Insights of Metabolomics Data.
Mannochio-Russo H, Gonçalves Nunes WD, Xing S, de Oliveira F, Caraballo-Rodríguez AM, Gomes PWP, Charron-Lamoureux V, Agongo J, Avalon NE, Bui T, Cancelada L, Chevrette MG, Cumsille A, de Araújo MB, De Graeve M, Deleray V, Donia MS, Dzveta MB, El Abiead Y, Ellis RJ, Franklin D Jr, Garg N, Gouda H, Djande CYH, Hiskia A, Ho BN, Hughes CC, Hwang S, Iliakopoulou S, Iudicello JE, Jarmusch AK, Kaloudis T, Koester I, Konkel R, Koolen HHF, Kvitne KE, La Rosa SL, Lam A, Lamichhane S, Lephatsi M, Letendre S, Magyari S, Mazur-Marzec H, McDonald D, Mohanty I, Monge-Loría M, Moore DJ, Veiga TAM, Mulaudzi MS, Nephali L, Nguyen G, Orságh M, Patan A, Pluskal T, Pope PB, de Medeiros LS, Stincone P, Tekel A, Thomas S, Torres RR, Tsunoda SM, Tugizimana F, van Faassen M, Vasquez-Castro F, Vitale GA, Wagner BC, Wang CX, Zervou SK, Zhao HN, Zuffa S, Petras D, McCall LI, Knight R, Wang M, Dorrestein PC. Mannochio-Russo H, et al. Among authors: ellis rj. bioRxiv [Preprint]. 2026 Jan 26:2026.01.24.701521. doi: 10.64898/2026.01.24.701521. bioRxiv. 2026. PMID: 41659575 Free PMC article. Preprint.
MS/MS Mass Spectrometry Filtering Tree for Bile Acid Isomer Annotation.
Mohanty I, Xing S, Castillo V, Agongo J, Patan A, Abiead YE, Mannochio-Russo H, Zuffa S, Zemlin J, Tronel A, Gouellec AL, Soranzo T, Wang CX, Iudicello JE, Andalibi MS, Ellis RJ, Moore DJ, Franklin DR Jr, Sala-Climent M, Guma M, Voigt RM, Kaddaruh-Dauok R, Siegel D, Wang M, Hagey LR, Dorrestein PC. Mohanty I, et al. Among authors: ellis rj. bioRxiv [Preprint]. 2025 Mar 9:2025.03.04.641505. doi: 10.1101/2025.03.04.641505. bioRxiv. 2025. Update in: Anal Chem. 2026 Feb 17;98(6):4571-4584. doi: 10.1021/acs.analchem.5c05677. PMID: 41659560 Free PMC article. Updated. Preprint.
A resource to empirically establish drug exposure records directly from untargeted metabolomics data.
Zhao HN, Kvitne KE, Brungs C, Mohan S, Charron-Lamoureux V, Bittremieux W, Tang R, Schmid R, Lamichhane S, Xing S, El Abiead Y, Andalibi MS, Mannochio-Russo H, Ambre M, Avalon NE, Bryant M, Burnett LA, Caraballo-Rodríguez AM, Maya MC, Chin L, Corominas L, Ellis RJ, Franklin D, Girod S, Gomes PWP, Hansen L, Heaton RK, Iudicello JE, Jarmusch AK, Khatib L, Letendre S, Magyari S, McDonald D, Mohanty I, Cumsille A, Moore DJ, Rajkumar P, Ross DH, Sapre H, Shahneh MRZ, Gil-Solsona R, Thomas SP, Tribelhorn C, Tubb HM, Walker C, Wang CX, Zemlin J, Zuffa S, Wishart DS, Gago-Ferrero P, Kaddurah-Daouk R, Wang M, Raffatellu M, Zengler K, Pluskal T, Xu L, Knight R, Tsunoda SM, Dorrestein PC. Zhao HN, et al. Among authors: ellis rj. Nat Commun. 2025 Dec 9;16(1):10600. doi: 10.1038/s41467-025-65993-5. Nat Commun. 2025. PMID: 41366203 Free PMC article.
1,023 results