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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1993 1
1994 1
1995 8
1996 5
1997 10
1998 14
1999 18
2000 21
2001 12
2002 10
2003 11
2004 8
2005 9
2006 17
2007 13
2008 20
2009 26
2010 24
2011 22
2012 27
2013 16
2014 23
2015 19
2016 19
2017 21
2018 20
2019 19
2020 21
2021 23
2022 23
2023 27
2024 33
2025 34
2026 7

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527 results

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Page 1
ResFinder 4.0 for predictions of phenotypes from genotypes.
Bortolaia V, Kaas RS, Ruppe E, Roberts MC, Schwarz S, Cattoir V, Philippon A, Allesoe RL, Rebelo AR, Florensa AF, Fagelhauer L, Chakraborty T, Neumann B, Werner G, Bender JK, Stingl K, Nguyen M, Coppens J, Xavier BB, Malhotra-Kumar S, Westh H, Pinholt M, Anjum MF, Duggett NA, Kempf I, Nykäsenoja S, Olkkola S, Wieczorek K, Amaro A, Clemente L, Mossong J, Losch S, Ragimbeau C, Lund O, Aarestrup FM. Bortolaia V, et al. Among authors: aarestrup fm. J Antimicrob Chemother. 2020 Dec 1;75(12):3491-3500. doi: 10.1093/jac/dkaa345. J Antimicrob Chemother. 2020. PMID: 32780112 Free PMC article.
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage.
Hendriksen RS, Munk P, Njage P, van Bunnik B, McNally L, Lukjancenko O, Röder T, Nieuwenhuijse D, Pedersen SK, Kjeldgaard J, Kaas RS, Clausen PTLC, Vogt JK, Leekitcharoenphon P, van de Schans MGM, Zuidema T, de Roda Husman AM, Rasmussen S, Petersen B; Global Sewage Surveillance project consortium; Amid C, Cochrane G, Sicheritz-Ponten T, Schmitt H, Alvarez JRM, Aidara-Kane A, Pamp SJ, Lund O, Hald T, Woolhouse M, Koopmans MP, Vigre H, Petersen TN, Aarestrup FM. Hendriksen RS, et al. Among authors: aarestrup fm. Nat Commun. 2019 Mar 8;10(1):1124. doi: 10.1038/s41467-019-08853-3. Nat Commun. 2019. PMID: 30850636 Free PMC article.
Real-time PCR assay to detect the novel Clade Ib monkeypox virus, September 2023 to May 2024.
Schuele L, Masirika LM, Udahemuka JC, Siangoli FB, Mbiribindi JB, Ndishimye P, Aarestrup FM, Koopmans M, Oude Munnink BB, Molenkamp R; GREATLIFE MPOX group; Collaborators. Schuele L, et al. Among authors: aarestrup fm. Euro Surveill. 2024 Aug;29(32):2400486. doi: 10.2807/1560-7917.ES.2024.29.32.2400486. Euro Surveill. 2024. PMID: 39119722 Free PMC article.
The COMPARE Data Hubs.
Amid C, Pakseresht N, Silvester N, Jayathilaka S, Lund O, Dynovski LD, Pataki BÁ, Visontai D, Xavier BB, Alako BTF, Belka A, Cisneros JLB, Cotten M, Haringhuizen GB, Harrison PW, Höper D, Holt S, Hundahl C, Hussein A, Kaas RS, Liu X, Leinonen R, Malhotra-Kumar S, Nieuwenhuijse DF, Rahman N, Dos S Ribeiro C, Skiby JE, Schmitz D, Stéger J, Szalai-Gindl JM, Thomsen MCF, Cacciò SM, Csabai I, Kroneman A, Koopmans M, Aarestrup F, Cochrane G. Amid C, et al. Among authors: aarestrup f. Database (Oxford). 2019 Jan 1;2019:baz136. doi: 10.1093/database/baz136. Database (Oxford). 2019. PMID: 31868882 Free PMC article.
Emergence of methicillin resistance predates the clinical use of antibiotics.
Larsen J, Raisen CL, Ba X, Sadgrove NJ, Padilla-González GF, Simmonds MSJ, Loncaric I, Kerschner H, Apfalter P, Hartl R, Deplano A, Vandendriessche S, Černá Bolfíková B, Hulva P, Arendrup MC, Hare RK, Barnadas C, Stegger M, Sieber RN, Skov RL, Petersen A, Angen Ø, Rasmussen SL, Espinosa-Gongora C, Aarestrup FM, Lindholm LJ, Nykäsenoja SM, Laurent F, Becker K, Walther B, Kehrenberg C, Cuny C, Layer F, Werner G, Witte W, Stamm I, Moroni P, Jørgensen HJ, de Lencastre H, Cercenado E, García-Garrote F, Börjesson S, Hæggman S, Perreten V, Teale CJ, Waller AS, Pichon B, Curran MD, Ellington MJ, Welch JJ, Peacock SJ, Seilly DJ, Morgan FJE, Parkhill J, Hadjirin NF, Lindsay JA, Holden MTG, Edwards GF, Foster G, Paterson GK, Didelot X, Holmes MA, Harrison EM, Larsen AR. Larsen J, et al. Among authors: aarestrup fm. Nature. 2022 Feb;602(7895):135-141. doi: 10.1038/s41586-021-04265-w. Epub 2022 Jan 5. Nature. 2022. PMID: 34987223 Free PMC article.
Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance.
Munk P, Brinch C, Møller FD, Petersen TN, Hendriksen RS, Seyfarth AM, Kjeldgaard JS, Svendsen CA, van Bunnik B, Berglund F; Global Sewage Surveillance Consortium; Larsson DGJ, Koopmans M, Woolhouse M, Aarestrup FM. Munk P, et al. Among authors: aarestrup fm. Nat Commun. 2022 Dec 1;13(1):7251. doi: 10.1038/s41467-022-34312-7. Nat Commun. 2022. PMID: 36456547 Free PMC article.
The European livestock resistome.
Munk P, Yang D, Röder T, Maier L, Petersen TN, Duarte ASR, Clausen PTLC, Brinch C, Van Gompel L, Luiken R, Wagenaar JA, Schmitt H, Heederik DJJ, Mevius DJ, Smit LAM; EFFORT Consortium; Bossers A, Aarestrup FM. Munk P, et al. Among authors: aarestrup fm. mSystems. 2024 Apr 16;9(4):e0132823. doi: 10.1128/msystems.01328-23. Epub 2024 Mar 19. mSystems. 2024. PMID: 38501800 Free PMC article.
Unveiling the global urban virome through wastewater metagenomics.
Worp N, Nieuwenhuijse DF, Izquierdo-Lara RW, Schapendonk CME, Brinch C, Jensen EEB, Munk P, Hendriksen RS; Global Sewage Surveillance Consortium; Aarestrup F, Oude Munnink BB, Koopmans MPG, de Graaf M. Worp N, et al. Among authors: aarestrup f. Nat Commun. 2025 Nov 28;16(1):10707. doi: 10.1038/s41467-025-65208-x. Nat Commun. 2025. PMID: 41315190 Free PMC article.
Antimicrobial resistance in swine production.
Aarestrup FM, Oliver Duran C, Burch DG. Aarestrup FM, et al. Anim Health Res Rev. 2008 Dec;9(2):135-48. doi: 10.1017/S1466252308001503. Epub 2008 Nov 5. Anim Health Res Rev. 2008. PMID: 18983723 Review.
Time-series sewage metagenomics distinguishes seasonal, human-derived and environmental microbial communities potentially allowing source-attributed surveillance.
Becsei Á, Fuschi A, Otani S, Kant R, Weinstein I, Alba P, Stéger J, Visontai D, Brinch C, de Graaf M, Schapendonk CME, Battisti A, De Cesare A, Oliveri C, Troja F, Sironen T, Vapalahti O, Pasquali F, Bányai K, Makó M, Pollner P, Merlotti A, Koopmans M, Csabai I, Remondini D, Aarestrup FM, Munk P. Becsei Á, et al. Among authors: aarestrup fm. Nat Commun. 2024 Aug 30;15(1):7551. doi: 10.1038/s41467-024-51957-8. Nat Commun. 2024. PMID: 39215001 Free PMC article.
527 results