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Year Number of Results
2009 1
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2011 1
2012 4
2013 2
2014 5
2015 2
2016 3
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2018 4
2019 10
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2022 3
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Page 1
OMAMO: orthology-based alternative model organism selection.
Nicheperovich A, Altenhoff AM, Dessimoz C, Majidian S. Nicheperovich A, et al. Among authors: altenhoff am. Bioinformatics. 2022 May 13;38(10):2965-2966. doi: 10.1093/bioinformatics/btac163. Epub 2022 Mar 18. Bioinformatics. 2022. PMID: 35561194 Free PMC article.
Big data and other challenges in the quest for orthologs.
Sonnhammer EL, Gabaldón T, Sousa da Silva AW, Martin M, Robinson-Rechavi M, Boeckmann B, Thomas PD, Dessimoz C; Quest for Orthologs consortium. Sonnhammer EL, et al. Bioinformatics. 2014 Nov 1;30(21):2993-8. doi: 10.1093/bioinformatics/btu492. Epub 2014 Jul 26. Bioinformatics. 2014. PMID: 25064571 Free PMC article.
Inferring Orthology and Paralogy.
Altenhoff AM, Glover NM, Dessimoz C. Altenhoff AM, et al. Methods Mol Biol. 2019;1910:149-175. doi: 10.1007/978-1-4939-9074-0_5. Methods Mol Biol. 2019. PMID: 31278664
DrosOMA: the Drosophila Orthologous Matrix browser.
Thiébaut A, Altenhoff AM, Campli G, Glover N, Dessimoz C, Waterhouse RM. Thiébaut A, et al. Among authors: altenhoff am. F1000Res. 2024 Jan 16;12:936. doi: 10.12688/f1000research.135250.2. eCollection 2023. F1000Res. 2024. PMID: 38434623 Free PMC article.
A large collection of bioinformatics question-query pairs over federated knowledge graphs: methodology and applications.
Bolleman J, Emonet V, Altenhoff A, Bairoch A, Blatter MC, Bridge A, Duvaud S, Gasteiger E, Kuznetsov D, Moretti S, Michel PA, Morgat A, Pagni M, Redaschi N, Zahn-Zabal M, de Farias TM, Sima AC. Bolleman J, et al. Among authors: altenhoff a. Gigascience. 2025 Jan 6;14:giaf045. doi: 10.1093/gigascience/giaf045. Gigascience. 2025. PMID: 40378136 Free PMC article.
EdgeHOG: a method for fine-grained ancestral gene order inference at large scale.
Bernard C, Nevers Y, Karampudi NBR, Gilbert KJ, Train C, Warwick Vesztrocy A, Glover N, Altenhoff A, Dessimoz C. Bernard C, et al. Among authors: altenhoff a. Nat Ecol Evol. 2025 Oct;9(10):1951-1961. doi: 10.1038/s41559-025-02818-0. Epub 2025 Aug 19. Nat Ecol Evol. 2025. PMID: 40830726 Free PMC article.
Orthology inference at scale with FastOMA.
Majidian S, Nevers Y, Yazdizadeh Kharrazi A, Warwick Vesztrocy A, Pascarelli S, Moi D, Glover N, Altenhoff AM, Dessimoz C. Majidian S, et al. Among authors: altenhoff am. Nat Methods. 2025 Feb;22(2):269-272. doi: 10.1038/s41592-024-02552-8. Epub 2025 Jan 3. Nat Methods. 2025. PMID: 39753922 Free PMC article.
Standardized benchmarking in the quest for orthologs.
Altenhoff AM, Boeckmann B, Capella-Gutierrez S, Dalquen DA, DeLuca T, Forslund K, Huerta-Cepas J, Linard B, Pereira C, Pryszcz LP, Schreiber F, da Silva AS, Szklarczyk D, Train CM, Bork P, Lecompte O, von Mering C, Xenarios I, Sjölander K, Jensen LJ, Martin MJ, Muffato M; Quest for Orthologs consortium; Gabaldón T, Lewis SE, Thomas PD, Sonnhammer E, Dessimoz C. Altenhoff AM, et al. Nat Methods. 2016 May;13(5):425-30. doi: 10.1038/nmeth.3830. Epub 2016 Apr 4. Nat Methods. 2016. PMID: 27043882 Free PMC article.
50 results