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16 results

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Page 1
Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas construction and usage.
Börner K, Blood PD, Silverstein JC, Ruffalo M, Satija R, Teichmann SA, Pryhuber GJ, Misra RS, Purkerson JM, Fan J, Hickey JW, Molla G, Xu C, Zhang Y, Weber GM, Jain Y, Qaurooni D, Kong Y; HRA Team; Bueckle A, Herr BW 2nd. Börner K, et al. Among authors: blood pd. Nat Methods. 2025 Apr;22(4):845-860. doi: 10.1038/s41592-024-02563-5. Epub 2025 Mar 13. Nat Methods. 2025. PMID: 40082611 Free PMC article.
Playbook workflow builder: Interactive construction of bioinformatics workflows.
Clarke DJB, Evangelista JE, Xie Z, Marino GB, Byrd AI, Maurya MR, Srinivasan S, Yu K, Petrosyan V, Roth ME, Milinkov M, King CH, Vora JK, Keeney J, Nemarich C, Khan W, Lachmann A, Ahmed N, Agris A, Pan J, Ramachandran S, Fahy E, Esquivel E, Mihajlovic A, Jevtic B, Milinovic V, Kim S, McNeely P, Wang T, Wenger E, Brown MA, Sickler A, Zhu Y, Jenkins SL, Blood PD, Taylor DM, Resnick AC, Mazumder R, Milosavljevic A, Subramaniam S, Ma'ayan A. Clarke DJB, et al. Among authors: blood pd. PLoS Comput Biol. 2025 Apr 3;21(4):e1012901. doi: 10.1371/journal.pcbi.1012901. eCollection 2025 Apr. PLoS Comput Biol. 2025. PMID: 40179105 Free PMC article.
Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.
Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, Fritz A, Garrido-Oter R, Jørgensen TS, Shapiro N, Blood PD, Gurevich A, Bai Y, Turaev D, DeMaere MZ, Chikhi R, Nagarajan N, Quince C, Meyer F, Balvočiūtė M, Hansen LH, Sørensen SJ, Chia BKH, Denis B, Froula JL, Wang Z, Egan R, Don Kang D, Cook JJ, Deltel C, Beckstette M, Lemaitre C, Peterlongo P, Rizk G, Lavenier D, Wu YW, Singer SW, Jain C, Strous M, Klingenberg H, Meinicke P, Barton MD, Lingner T, Lin HH, Liao YC, Silva GGZ, Cuevas DA, Edwards RA, Saha S, Piro VC, Renard BY, Pop M, Klenk HP, Göker M, Kyrpides NC, Woyke T, Vorholt JA, Schulze-Lefert P, Rubin EM, Darling AE, Rattei T, McHardy AC. Sczyrba A, et al. Among authors: blood pd. Nat Methods. 2017 Nov;14(11):1063-1071. doi: 10.1038/nmeth.4458. Epub 2017 Oct 2. Nat Methods. 2017. PMID: 28967888 Free PMC article.
Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas Construction and Usage.
Börner K, Blood PD, Silverstein JC, Ruffalo M, Satija R, Teichmann SA, Pryhuber G, Misra RS, Purkerson J, Fan J, Hickey JW, Molla G, Xu C, Zhang Y, Weber G, Jain Y, Qaurooni D, Kong Y; HRA Team; Bueckle A, Herr BW 2nd. Börner K, et al. Among authors: blood pd. bioRxiv [Preprint]. 2024 Aug 14:2024.03.27.587041. doi: 10.1101/2024.03.27.587041. bioRxiv. 2024. Update in: Nat Methods. 2025 Apr;22(4):845-860. doi: 10.1038/s41592-024-02563-5. PMID: 38826261 Free PMC article. Updated. Preprint.
TCGA Expedition: A Data Acquisition and Management System for TCGA Data.
Chandran UR, Medvedeva OP, Barmada MM, Blood PD, Chakka A, Luthra S, Ferreira A, Wong KF, Lee AV, Zhang Z, Budden R, Scott JR, Berndt A, Berg JM, Jacobson RS. Chandran UR, et al. Among authors: blood pd. PLoS One. 2016 Oct 27;11(10):e0165395. doi: 10.1371/journal.pone.0165395. eCollection 2016. PLoS One. 2016. PMID: 27788220 Free PMC article.
Leveraging the national cyberinfrastructure for biomedical research.
LeDuc R, Vaughn M, Fonner JM, Sullivan M, Williams JG, Blood PD, Taylor J, Barnett W. LeDuc R, et al. Among authors: blood pd. J Am Med Inform Assoc. 2014 Mar-Apr;21(2):195-9. doi: 10.1136/amiajnl-2013-002059. Epub 2013 Aug 20. J Am Med Inform Assoc. 2014. PMID: 23964072 Free PMC article.
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis.
Haas BJ, Papanicolaou A, Yassour M, Grabherr M, Blood PD, Bowden J, Couger MB, Eccles D, Li B, Lieber M, MacManes MD, Ott M, Orvis J, Pochet N, Strozzi F, Weeks N, Westerman R, William T, Dewey CN, Henschel R, LeDuc RD, Friedman N, Regev A. Haas BJ, et al. Among authors: blood pd. Nat Protoc. 2013 Aug;8(8):1494-512. doi: 10.1038/nprot.2013.084. Epub 2013 Jul 11. Nat Protoc. 2013. PMID: 23845962 Free PMC article.
16 results