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2021 13
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Page 1
A new lineage nomenclature to aid genomic surveillance of dengue virus.
Hill V, Cleemput S, Pereira JS, Gifford RJ, Fonseca V, Tegally H, Brito AF, Ribeiro G, de Souza VC, Brcko IC, Ribeiro IS, De Lima ITT, Slavov SN, Sampaio SC, Elias MC, Tran VT, Kien DTH, Huynh T, Yacoub S, Dieng I, Salvato R, Wallau GL, Gregianini TS, Godinho FMS, Vogels CBF, Breban MI, Leguia M, Jagtap S, Roy R, Hapuarachchi C, Mwanyika G, Giovanetti M, Alcantara LCJ, Faria NR, Carrington CVF, Hanley KA, Holmes EC, Dumon W, Lima ARJ, Oliveira T, Grubaugh ND. Hill V, et al. Among authors: breban mi. PLoS Biol. 2024 Sep 16;22(9):e3002834. doi: 10.1371/journal.pbio.3002834. eCollection 2024 Sep. PLoS Biol. 2024. PMID: 39283942 Free PMC article.
Dengue Outbreak Caused by Multiple Virus Serotypes and Lineages, Colombia, 2023-2024.
Grubaugh ND, Torres-Hernández D, Murillo-Ortiz MA, Dávalos DM, Lopez P, Hurtado IC, Breban MI, Bourgikos E, Hill V, López-Medina E. Grubaugh ND, et al. Among authors: breban mi. Emerg Infect Dis. 2024 Nov;30(11):2391-2395. doi: 10.3201/eid3011.241031. Epub 2024 Oct 8. Emerg Infect Dis. 2024. PMID: 39378873 Free PMC article.
Sequencing SARS-CoV-2 genomes from saliva.
Alpert T, Vogels CBF, Breban MI, Petrone ME, Wyllie AL, Grubaugh ND, Fauver JR. Alpert T, et al. Among authors: breban mi. Virus Evol. 2022 Jan 3;8(1):veab098. doi: 10.1093/ve/veab098. eCollection 2022. Virus Evol. 2022. PMID: 35542310 Free PMC article.
The impact of orthopoxvirus vaccination and Mpox infection on cross-protective immunity: a multicohort observational study.
Crandell J, Monteiro VS, Pischel L, Fang Z, Conde L, Zhong Y, Lawres L, de Asis GM, Maciel G, Zaleski A, Lira GS, Higa LM, Breban MI, Vogels CBF, Caria J, Pinto AR, Almeida V, Maltez F, Cordeiro R, Póvoas D, Grubaugh ND, Aoun-Barakat L, Grifoni A, Sette A, Castineiras TM, Chen S, Yildirim I, Vale AM, Omer SB, Lucas C. Crandell J, et al. Among authors: breban mi. Lancet Microbe. 2025 Jul;6(7):101098. doi: 10.1016/j.lanmic.2025.101098. Epub 2025 Apr 28. Lancet Microbe. 2025. PMID: 40311645 Free article.
Travel surveillance uncovers dengue virus dynamics and introductions in the Caribbean.
Taylor-Salmon E, Hill V, Paul LM, Koch RT, Breban MI, Chaguza C, Sodeinde A, Warren JL, Bunch S, Cano N, Cone M, Eysoldt S, Garcia A, Gilles N, Hagy A, Heberlein L, Jaber R, Kassens E, Colarusso P, Davis A, Baudin S, Rico E, Mejía-Echeverri Á, Scott B, Stanek D, Zimler R, Muñoz-Jordán JL, Santiago GA, Adams LE, Paz-Bailey G, Spillane M, Katebi V, Paulino-Ramírez R, Mueses S, Peguero A, Sánchez N, Norman FF, Galán JC, Huits R, Hamer DH, Vogels CBF, Morrison A, Michael SF, Grubaugh ND. Taylor-Salmon E, et al. Among authors: breban mi. medRxiv [Preprint]. 2023 Nov 12:2023.11.11.23298412. doi: 10.1101/2023.11.11.23298412. medRxiv. 2023. Update in: Nat Commun. 2024 Apr 25;15(1):3508. doi: 10.1038/s41467-024-47774-8. PMID: 37986857 Free PMC article. Updated. Preprint.
Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in New England, USA.
Earnest R, Uddin R, Matluk N, Renzette N, Turbett SE, Siddle KJ, Loreth C, Adams G, Tomkins-Tinch CH, Petrone ME, Rothman JE, Breban MI, Koch RT, Billig K, Fauver JR, Vogels CBF, Bilguvar K, De Kumar B, Landry ML, Peaper DR, Kelly K, Omerza G, Grieser H, Meak S, Martha J, Dewey HB, Kales S, Berenzy D, Carpenter-Azevedo K, King E, Huard RC, Novitsky V, Howison M, Darpolor J, Manne A, Kantor R, Smole SC, Brown CM, Fink T, Lang AS, Gallagher GR, Pitzer VE, Sabeti PC, Gabriel S, MacInnis BL; New England Variant Investigation Team; Tewhey R, Adams MD, Park DJ, Lemieux JE, Grubaugh ND. Earnest R, et al. Among authors: breban mi. Cell Rep Med. 2022 Mar 11;3(4):100583. doi: 10.1016/j.xcrm.2022.100583. eCollection 2022 Apr 19. Cell Rep Med. 2022. PMID: 35480627 Free PMC article.
Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques.
Baaijens JA, Zulli A, Ott IM, Nika I, van der Lugt MJ, Petrone ME, Alpert T, Fauver JR, Kalinich CC, Vogels CBF, Breban MI, Duvallet C, McElroy KA, Ghaeli N, Imakaev M, Mckenzie-Bennett MF, Robison K, Plocik A, Schilling R, Pierson M, Littlefield R, Spencer ML, Simen BB; Yale SARS-CoV-2 Genomic Surveillance Initiative; Hanage WP, Grubaugh ND, Peccia J, Baym M. Baaijens JA, et al. Among authors: breban mi. Genome Biol. 2022 Nov 8;23(1):236. doi: 10.1186/s13059-022-02805-9. Genome Biol. 2022. PMID: 36348471 Free PMC article.
47 results