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21 results

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Page 1
Pervasive tandem duplications and convergent evolution shape coral genomes.
Noel B, Denoeud F, Rouan A, Buitrago-López C, Capasso L, Poulain J, Boissin E, Pousse M, Da Silva C, Couloux A, Armstrong E, Carradec Q, Cruaud C, Labadie K, Lê-Hoang J, Tambutté S, Barbe V, Moulin C, Bourdin G, Iwankow G, Romac S, Agostini S, Banaigs B, Boss E, Bowler C, de Vargas C, Douville E, Flores JM, Forcioli D, Furla P, Galand PE, Lombard F, Pesant S, Reynaud S, Sullivan MB, Sunagawa S, Thomas OP, Troublé R, Thurber RV, Allemand D, Planes S, Gilson E, Zoccola D, Wincker P, Voolstra CR, Aury JM. Noel B, et al. Among authors: carradec q. Genome Biol. 2023 Jun 1;24(1):123. doi: 10.1186/s13059-023-02960-7. Genome Biol. 2023. PMID: 37264421 Free PMC article.
A global ocean atlas of eukaryotic genes.
Carradec Q, Pelletier E, Da Silva C, Alberti A, Seeleuthner Y, Blanc-Mathieu R, Lima-Mendez G, Rocha F, Tirichine L, Labadie K, Kirilovsky A, Bertrand A, Engelen S, Madoui MA, Méheust R, Poulain J, Romac S, Richter DJ, Yoshikawa G, Dimier C, Kandels-Lewis S, Picheral M, Searson S; Tara Oceans Coordinators; Jaillon O, Aury JM, Karsenti E, Sullivan MB, Sunagawa S, Bork P, Not F, Hingamp P, Raes J, Guidi L, Ogata H, de Vargas C, Iudicone D, Bowler C, Wincker P. Carradec Q, et al. Nat Commun. 2018 Jan 25;9(1):373. doi: 10.1038/s41467-017-02342-1. Nat Commun. 2018. PMID: 29371626 Free PMC article.
Diversity and ecological footprint of Global Ocean RNA viruses.
Dominguez-Huerta G, Zayed AA, Wainaina JM, Guo J, Tian F, Pratama AA, Bolduc B, Mohssen M, Zablocki O, Pelletier E, Delage E, Alberti A, Aury JM, Carradec Q, da Silva C, Labadie K, Poulain J; Tara Oceans Coordinators§; Bowler C, Eveillard D, Guidi L, Karsenti E, Kuhn JH, Ogata H, Wincker P, Culley A, Chaffron S, Sullivan MB. Dominguez-Huerta G, et al. Among authors: carradec q. Science. 2022 Jun 10;376(6598):1202-1208. doi: 10.1126/science.abn6358. Epub 2022 Jun 9. Science. 2022. PMID: 35679415
Host transcriptomic plasticity and photosymbiotic fidelity underpin Pocillopora acclimatization across thermal regimes in the Pacific Ocean.
Armstrong EJ, Lê-Hoang J, Carradec Q, Aury JM, Noel B, Hume BCC, Voolstra CR, Poulain J, Belser C, Paz-García DA, Cruaud C, Labadie K, Da Silva C, Moulin C, Boissin E, Bourdin G, Iwankow G, Romac S, Agostini S, Banaigs B, Boss E, Bowler C, de Vargas C, Douville E, Flores M, Forcioli D, Furla P, Galand PE, Gilson E, Lombard F, Pesant S, Reynaud S, Sullivan MB, Sunagawa S, Thomas OP, Troublé R, Thurber RV, Zoccola D, Planes S, Allemand D, Wincker P. Armstrong EJ, et al. Among authors: carradec q. Nat Commun. 2023 Jun 1;14(1):3056. doi: 10.1038/s41467-023-38610-6. Nat Commun. 2023. PMID: 37264036 Free PMC article.
Telomere DNA length regulation is influenced by seasonal temperature differences in short-lived but not in long-lived reef-building corals.
Rouan A, Pousse M, Djerbi N, Porro B, Bourdin G, Carradec Q, Hume BC, Poulain J, Lê-Hoang J, Armstrong E, Agostini S, Salazar G, Ruscheweyh HJ, Aury JM, Paz-García DA, McMinds R, Giraud-Panis MJ, Deshuraud R, Ottaviani A, Morini LD, Leone C, Wurzer L, Tran J, Zoccola D, Pey A, Moulin C, Boissin E, Iwankow G, Romac S, de Vargas C, Banaigs B, Boss E, Bowler C, Douville E, Flores M, Reynaud S, Thomas OP, Troublé R, Thurber RV, Planes S, Allemand D, Pesant S, Galand PE, Wincker P, Sunagawa S, Röttinger E, Furla P, Voolstra CR, Forcioli D, Lombard F, Gilson E. Rouan A, et al. Among authors: carradec q. Nat Commun. 2023 Jun 1;14(1):3038. doi: 10.1038/s41467-023-38499-1. Nat Commun. 2023. PMID: 37263999 Free PMC article.
Genomic adaptation of the picoeukaryote Pelagomonas calceolata to iron-poor oceans revealed by a chromosome-scale genome sequence.
Guérin N, Ciccarella M, Flamant E, Frémont P, Mangenot S, Istace B, Noel B, Belser C, Bertrand L, Labadie K, Cruaud C, Romac S, Bachy C, Gachenot M, Pelletier E, Alberti A, Jaillon O, Wincker P, Aury JM, Carradec Q. Guérin N, et al. Among authors: carradec q. Commun Biol. 2022 Sep 16;5(1):983. doi: 10.1038/s42003-022-03939-z. Commun Biol. 2022. PMID: 36114260 Free PMC article.
Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans.
Seeleuthner Y, Mondy S, Lombard V, Carradec Q, Pelletier E, Wessner M, Leconte J, Mangot JF, Poulain J, Labadie K, Logares R, Sunagawa S, de Berardinis V, Salanoubat M, Dimier C, Kandels-Lewis S, Picheral M, Searson S; Tara Oceans Coordinators; Pesant S, Poulton N, Stepanauskas R, Bork P, Bowler C, Hingamp P, Sullivan MB, Iudicone D, Massana R, Aury JM, Henrissat B, Karsenti E, Jaillon O, Sieracki M, de Vargas C, Wincker P. Seeleuthner Y, et al. Among authors: carradec q. Nat Commun. 2018 Jan 22;9(1):310. doi: 10.1038/s41467-017-02235-3. Nat Commun. 2018. PMID: 29358710 Free PMC article.
Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition.
Belser C, Poulain J, Labadie K, Gavory F, Alberti A, Guy J, Carradec Q, Cruaud C, Da Silva C, Engelen S, Mielle P, Perdereau A, Samson G, Gas S; Genoscope Technical Team; Voolstra CR, Galand PE, Flores JM, Hume BCC, Perna G, Ziegler M, Ruscheweyh HJ, Boissin E, Romac S, Bourdin G, Iwankow G, Moulin C, Paz García DA, Agostini S, Banaigs B, Boss E, Bowler C, de Vargas C, Douville E, Forcioli D, Furla P, Gilson E, Lombard F, Pesant S, Reynaud S, Sunagawa S, Thomas OP, Troublé R, Thurber RV, Zoccola D, Scarpelli C, Jacoby EK, Oliveira PH, Aury JM, Allemand D, Planes S, Wincker P. Belser C, et al. Among authors: carradec q. Sci Data. 2023 Jun 1;10(1):326. doi: 10.1038/s41597-023-02204-0. Sci Data. 2023. PMID: 37264047 Free PMC article.
Cryptic and abundant marine viruses at the evolutionary origins of Earth's RNA virome.
Zayed AA, Wainaina JM, Dominguez-Huerta G, Pelletier E, Guo J, Mohssen M, Tian F, Pratama AA, Bolduc B, Zablocki O, Cronin D, Solden L, Delage E, Alberti A, Aury JM, Carradec Q, da Silva C, Labadie K, Poulain J, Ruscheweyh HJ, Salazar G, Shatoff E; Tara Oceans Coordinators‡; Bundschuh R, Fredrick K, Kubatko LS, Chaffron S, Culley AI, Sunagawa S, Kuhn JH, Wincker P, Sullivan MB, Acinas SG, Babin M, Bork P, Boss E, Bowler C, Cochrane G, de Vargas C, Gorsky G, Guidi L, Grimsley N, Hingamp P, Iudicone D, Jaillon O, Kandels S, Karp-Boss L, Karsenti E, Not F, Ogata H, Poulton N, Pesant S, Sardet C, Speich S, Stemmann L, Sullivan MB, Sungawa S, Wincker P. Zayed AA, et al. Among authors: carradec q. Science. 2022 Apr 8;376(6589):156-162. doi: 10.1126/science.abm5847. Epub 2022 Apr 7. Science. 2022. PMID: 35389782 Free PMC article.
Disparate genetic divergence patterns in three corals across a pan-Pacific environmental gradient highlight species-specific adaptation.
Voolstra CR, Hume BCC, Armstrong EJ, Mitushasi G, Porro B, Oury N, Agostini S, Boissin E, Poulain J, Carradec Q, Paz-García DA, Zoccola D, Magalon H, Moulin C, Bourdin G, Iwankow G, Romac S, Banaigs B, Boss E, Bowler C, de Vargas C, Douville E, Flores M, Furla P, Galand PE, Gilson E, Lombard F, Pesant S, Reynaud S, Sullivan MB, Sunagawa S, Thomas OP, Troublé R, Thurber RV, Wincker P, Planes S, Allemand D, Forcioli D. Voolstra CR, et al. Among authors: carradec q. NPJ Biodivers. 2023 Jul 7;2(1):15. doi: 10.1038/s44185-023-00020-8. NPJ Biodivers. 2023. PMID: 39242808 Free PMC article.
21 results