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Page 1
NeAT: a Nonlinear Analysis Toolbox for Neuroimaging.
Casamitjana A, Vilaplana V, Puch S, Aduriz A, López C, Operto G, Cacciaglia R, Falcón C, Molinuevo JL, Gispert JD; Alzheimer’s Disease Neuroimaging Initiative. Casamitjana A, et al. Neuroinformatics. 2020 Oct;18(4):517-530. doi: 10.1007/s12021-020-09456-w. Neuroinformatics. 2020. PMID: 32212063 Free PMC article.
A multimodal computational pipeline for 3D histology of the human brain.
Mancini M, Casamitjana A, Peter L, Robinson E, Crampsie S, Thomas DL, Holton JL, Jaunmuktane Z, Iglesias JE. Mancini M, et al. Among authors: casamitjana a. Sci Rep. 2020 Aug 14;10(1):13839. doi: 10.1038/s41598-020-69163-z. Sci Rep. 2020. PMID: 32796937 Free PMC article.
Synthetic data in generalizable, learning-based neuroimaging.
Gopinath K, Hoopes A, Alexander DC, Arnold SE, Balbastre Y, Billot B, Casamitjana A, Cheng Y, Chua RYZ, Edlow BL, Fischl B, Gazula H, Hoffmann M, Keene CD, Kim S, Kimberly WT, Laguna S, Larson KE, Van Leemput K, Puonti O, Rodrigues LM, Rosen MS, Tregidgo HFJ, Varadarajan D, Young SI, Dalca AV, Iglesias JE. Gopinath K, et al. Among authors: casamitjana a. Imaging Neurosci (Camb). 2024 Nov 19;2:1-22. doi: 10.1162/imag_a_00337. eCollection 2024 Nov 1. Imaging Neurosci (Camb). 2024. PMID: 39850547 Free PMC article.
A probabilistic histological atlas of the human brain for MRI segmentation.
Casamitjana A, Mancini M, Robinson E, Peter L, Annunziata R, Althonayan J, Crampsie S, Blackburn E, Billot B, Atzeni A, Puonti O, Balbastre Y, Schmidt P, Hughes J, Augustinack JC, Edlow BL, Zöllei L, Thomas DL, Kliemann D, Bocchetta M, Strand C, Holton JL, Jaunmuktane Z, Iglesias JE. Casamitjana A, et al. Nature. 2025 Nov 5. doi: 10.1038/s41586-025-09708-2. Online ahead of print. Nature. 2025. PMID: 41193801
A next-generation, histological atlas of the human brain and its application to automated brain MRI segmentation.
Casamitjana A, Mancini M, Robinson E, Peter L, Annunziata R, Althonayan J, Crampsie S, Blackburn E, Billot B, Atzeni A, Puonti O, Balbastre Y, Schmidt P, Hughes J, Augustinack JC, Edlow BL, Zöllei L, Thomas DL, Kliemann D, Bocchetta M, Strand C, Holton JL, Jaunmuktane Z, Iglesias JE. Casamitjana A, et al. bioRxiv [Preprint]. 2024 Sep 6:2024.02.05.579016. doi: 10.1101/2024.02.05.579016. bioRxiv. 2024. Update in: Nature. 2025 Nov 5. doi: 10.1038/s41586-025-09708-2. PMID: 39282320 Free PMC article. Updated. Preprint.
Fast segmentation with the NextBrain histological atlas.
Puonti O, Nolan J, Dicamillo R, Balbastre Y, Casamitjana A, Mancini M, Robinson E, Peter L, Annunziata R, Althonayan J, Crampsie S, Blackburn E, Billot B, Atzeni A, Schmidt P, Hughes J, Augustinack J, Edlow B, Zöllei L, Thomas DL, Kliemann D, Bocchetta M, Strand C, Holton J, Jaunmuktane Z, Iglesias JE. Puonti O, et al. Among authors: casamitjana a. bioRxiv [Preprint]. 2025 Sep 25:2025.09.22.673638. doi: 10.1101/2025.09.22.673638. bioRxiv. 2025. PMID: 41040372 Free PMC article. Preprint.
22 results