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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2005 1
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2007 1
2008 3
2009 4
2010 5
2011 2
2012 2
2013 4
2014 3
2015 7
2016 9
2017 16
2018 16
2019 14
2020 18
2021 21
2022 30
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179 results

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Page 1
A survey of best practices for RNA-seq data analysis.
Conesa A, Madrigal P, Tarazona S, Gomez-Cabrero D, Cervera A, McPherson A, Szcześniak MW, Gaffney DJ, Elo LL, Zhang X, Mortazavi A. Conesa A, et al. Among authors: elo ll. Genome Biol. 2016 Jan 26;17:13. doi: 10.1186/s13059-016-0881-8. Genome Biol. 2016. PMID: 26813401 Free PMC article. Review.
Computational solutions for spatial transcriptomics.
Kleino I, Frolovaitė P, Suomi T, Elo LL. Kleino I, et al. Among authors: elo ll. Comput Struct Biotechnol J. 2022 Sep 1;20:4870-4884. doi: 10.1016/j.csbj.2022.08.043. eCollection 2022. Comput Struct Biotechnol J. 2022. PMID: 36147664 Free PMC article. Review.
Metagenomics analysis of gut microbiota in response to diet intervention and gestational diabetes in overweight and obese women: a randomised, double-blind, placebo-controlled clinical trial.
Mokkala K, Paulin N, Houttu N, Koivuniemi E, Pellonperä O, Khan S, Pietilä S, Tertti K, Elo LL, Laitinen K. Mokkala K, et al. Among authors: elo ll. Gut. 2021 Feb;70(2):309-318. doi: 10.1136/gutjnl-2020-321643. Epub 2020 Aug 24. Gut. 2021. PMID: 32839200 Free article. Clinical Trial.
A metabolite-based resistance mechanism against malaria.
Figueiredo A, Rastogi ST, Ramos S, Nogueira F, De Villiers K, de Sousa AGG, Votborg-Novél L, von Wedel C, Tober-Lau P, Jentho E, Pagnotta S, Mesquita M, Cardoso S, Bortolussi G, Muro AF, Tranfield EM, Thibaud J, Duarte D, Sousa AL, Pinto SN, Kitoko J, Mombo-Ngoma G, Mischlinger J, Junttila S, Alenquer M, Amorim MJ, Vasavda C, Bosma PJ, Violante S, Drotleff B, Paixão T, Portugal S, Kurth F, Elo LL, Paul BD, Martins R, Soares MP. Figueiredo A, et al. Among authors: elo ll. Science. 2025 Jun 12;388(6752):eadq6741. doi: 10.1126/science.adq6741. Epub 2025 Jun 12. Science. 2025. PMID: 40504905
A Metabolite-Based Resistance Mechanism Against Malaria.
Figueiredo A, Rastogi ST, Ramos S, Nogueira F, De Villiers K, de Sousa AGG, Votborg-Novél L, von Wedel C, Tober-Lau P, Jentho E, Pagnotta S, Mesquita M, Cardoso S, Bortolussi G, Muro AF, Tranfield EM, Thibaud J, Duarte D, Sousa AL, Pinto SN, Kitoko J, Mombo-Ngoma G, Mischlinger J, Junttila S, Alenquer M, Amorim MJ, Vasavda C, Bosma PJ, Violante S, Drotleff B, Paixão T, Portugal S, Kurth F, Elo LL, Paul BD, Martins R, Soares MP. Figueiredo A, et al. Among authors: elo ll. bioRxiv [Preprint]. 2025 Feb 26:2025.02.20.639306. doi: 10.1101/2025.02.20.639306. bioRxiv. 2025. Update in: Science. 2025 Jun 12;388(6752):eadq6741. doi: 10.1126/science.adq6741. PMID: 40060532 Free PMC article. Updated. Preprint.
Community assessment of methods to deconvolve cellular composition from bulk gene expression.
White BS, de Reyniès A, Newman AM, Waterfall JJ, Lamb A, Petitprez F, Lin Y, Yu R, Guerrero-Gimenez ME, Domanskyi S, Monaco G, Chung V, Banerjee J, Derrick D, Valdeolivas A, Li H, Xiao X, Wang S, Zheng F, Yang W, Catania CA, Lang BJ, Bertus TJ, Piermarocchi C, Caruso FP, Ceccarelli M, Yu T, Guo X, Bletz J, Coller J, Maecker H, Duault C, Shokoohi V, Patel S, Liliental JE, Simon S; Tumor Deconvolution DREAM Challenge consortium; Saez-Rodriguez J, Heiser LM, Guinney J, Gentles AJ. White BS, et al. Nat Commun. 2024 Aug 27;15(1):7362. doi: 10.1038/s41467-024-50618-0. Nat Commun. 2024. PMID: 39191725 Free PMC article.
Gene expression signature predicts rate of type 1 diabetes progression.
Suomi T, Starskaia I, Kalim UU, Rasool O, Jaakkola MK, Grönroos T, Välikangas T, Brorsson C, Mazzoni G, Bruggraber S, Overbergh L, Dunger D, Peakman M, Chmura P, Brunak S, Schulte AM, Mathieu C, Knip M, Lahesmaa R, Elo LL; INNODIA Consortium. Suomi T, et al. Among authors: elo ll. EBioMedicine. 2023 Jun;92:104625. doi: 10.1016/j.ebiom.2023.104625. Epub 2023 May 22. EBioMedicine. 2023. PMID: 37224769 Free PMC article.
Stable Iterative Variable Selection.
Mahmoudian M, Venäläinen MS, Klén R, Elo LL. Mahmoudian M, et al. Among authors: elo ll. Bioinformatics. 2021 Dec 11;37(24):4810-4817. doi: 10.1093/bioinformatics/btab501. Bioinformatics. 2021. PMID: 34270690 Free PMC article.
179 results