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Page 1
A global metagenomic map of urban microbiomes and antimicrobial resistance.
Danko D, Bezdan D, Afshin EE, Ahsanuddin S, Bhattacharya C, Butler DJ, Chng KR, Donnellan D, Hecht J, Jackson K, Kuchin K, Karasikov M, Lyons A, Mak L, Meleshko D, Mustafa H, Mutai B, Neches RY, Ng A, Nikolayeva O, Nikolayeva T, Png E, Ryon KA, Sanchez JL, Shaaban H, Sierra MA, Thomas D, Young B, Abudayyeh OO, Alicea J, Bhattacharyya M, Blekhman R, Castro-Nallar E, Cañas AM, Chatziefthimiou AD, Crawford RW, De Filippis F, Deng Y, Desnues C, Dias-Neto E, Dybwad M, Elhaik E, Ercolini D, Frolova A, Gankin D, Gootenberg JS, Graf AB, Green DC, Hajirasouliha I, Hastings JJA, Hernandez M, Iraola G, Jang S, Kahles A, Kelly FJ, Knights K, Kyrpides NC, Łabaj PP, Lee PKH, Leung MHY, Ljungdahl PO, Mason-Buck G, McGrath K, Meydan C, Mongodin EF, Moraes MO, Nagarajan N, Nieto-Caballero M, Noushmehr H, Oliveira M, Ossowski S, Osuolale OO, Özcan O, Paez-Espino D, Rascovan N, Richard H, Rätsch G, Schriml LM, Semmler T, Sezerman OU, Shi L, Shi T, Siam R, Song LH, Suzuki H, Court DS, Tighe SW, Tong X, Udekwu KI, Ugalde JA, Valentine B, Vassilev DI, Vayndorf EM, Velavan TP, Wu J, Zambrano MM, Zhu J, Zhu S, Mason CE; International MetaSUB Consortium. Danko D, et al. Cell. 2021 Jun 24;184(13):3376-3393.e17. doi: 10.1016/j.cell.2021.05.002. Epub 2021 May 26. Cell. 2021. PMID: 34043940 Free PMC article.
Reconstruction of Metagenome-Assembled Genomes from Aquaria.
Ettinger CL, Bryan J, Tokajian S, Jospin G, Coil D, Eisen JA. Ettinger CL, et al. Microbiol Resour Announc. 2021 Aug 5;10(31):e0055721. doi: 10.1128/MRA.00557-21. Epub 2021 Aug 5. Microbiol Resour Announc. 2021. PMID: 34351234 Free PMC article.
A guide to preprinting for early-career researchers.
Ettinger CL, Sadanandappa MK, Görgülü K, Coghlan KL, Hallenbeck KK, Puebla I. Ettinger CL, et al. Biol Open. 2022 Jul 15;11(7):bio059310. doi: 10.1242/bio.059310. Epub 2022 Jul 25. Biol Open. 2022. PMID: 35876380 Free PMC article.
Fungi in the Marine Environment: Open Questions and Unsolved Problems.
Amend A, Burgaud G, Cunliffe M, Edgcomb VP, Ettinger CL, Gutiérrez MH, Heitman J, Hom EFY, Ianiri G, Jones AC, Kagami M, Picard KT, Quandt CA, Raghukumar S, Riquelme M, Stajich J, Vargas-Muñiz J, Walker AK, Yarden O, Gladfelter AS. Amend A, et al. Among authors: ettinger cl. mBio. 2019 Mar 5;10(2):e01189-18. doi: 10.1128/mBio.01189-18. mBio. 2019. PMID: 30837337 Free PMC article. Review.
A roadmap for equitable reuse of public microbiome data.
Hug LA, Hatzenpichler R, Moraru C, Soares AR, Meyer F, Heyder A; Data Reuse Consortium; Probst AJ. Hug LA, et al. Nat Microbiol. 2025 Oct;10(10):2384-2395. doi: 10.1038/s41564-025-02116-2. Epub 2025 Sep 26. Nat Microbiol. 2025. PMID: 41006832 Review.
STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies.
Kelliher JM, Mirzayi C, Bordenstein SR, Oliver A, Kellogg CA, Hatcher EL, Berg M, Baldrian P, Aljumaah M, Miller CML, Mungall C, Novak V, Palucki A, Smith E, Tabassum N, Bonito G, Brister JR, Chain PSG, Chen M, Degregori S, Dundore-Arias JP, Emerson JB, Moreira C Fernandes V, Flores R, Gonzalez A, Hansen ZA, Jackson SA, Moustafa AM, Northen TR, Pariente N, Pett-Ridge J, Record S, Reji L, Reysenbach AL, Rich VI, Richardson L, Roux S, Schriml LM, Shabman RS, Sierra MA, Sullivan MB, Sundaramurthy P, Thibault KM, Thompson LR, Tighe S, Vereen E; STREAMS Consortium; Eloe-Fadrosh EA. Kelliher JM, et al. Nat Microbiol. 2025 Dec;10(12):3059-3068. doi: 10.1038/s41564-025-02186-2. Epub 2025 Dec 1. Nat Microbiol. 2025. PMID: 41326814 Review.
35 results