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scDREAMER for atlas-level integration of single-cell datasets using deep generative model paired with adversarial classifier.
Nat Commun. 2023 Nov 27;14(1):7781. doi: 10.1038/s41467-023-43590-8.
Nat Commun. 2023.
PMID: 38012145
Free PMC article.
scClassify: sample size estimation and multiscale classification of cells using single and multiple reference.
Lin Y, Cao Y, Kim HJ, Salim A, Speed TP, Lin DM, Yang P, Yang JYH.
Lin Y, et al.
Mol Syst Biol. 2020 Jun;16(6):e9389. doi: 10.15252/msb.20199389.
Mol Syst Biol. 2020.
PMID: 32567229
Free PMC article.
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Identification of type 2 diabetes- and obesity-associated human β-cells using deep transfer learning.
Roy G, Syed R, Lazaro O, Robertson S, McCabe SD, Rodriguez D, Mawla AM, Johnson TS, Kalwat MA.
Roy G, et al.
Elife. 2025 Sep 22;13:RP96713. doi: 10.7554/eLife.96713.
Elife. 2025.
PMID: 40982369
Free PMC article.
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