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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2005 4
2006 1
2007 2
2009 3
2011 2
2012 4
2013 4
2014 3
2015 5
2016 6
2017 10
2018 4
2019 10
2020 3
2021 2
2022 6
2023 11
2024 6
2025 9

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89 results

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Page 1
Integrated genomic analyses of ovarian carcinoma.
Cancer Genome Atlas Research Network. Cancer Genome Atlas Research Network. Nature. 2011 Jun 29;474(7353):609-15. doi: 10.1038/nature10166. Nature. 2011. PMID: 21720365 Free PMC article.
Human interpretable grammar encodes multicellular systems biology models to democratize virtual cell laboratories.
Johnson JAI, Bergman DR, Rocha HL, Zhou DL, Cramer E, Mclean IC, Dance YW, Booth M, Nicholas Z, Lopez-Vidal T, Deshpande A, Heiland R, Bucher E, Shojaeian F, Dunworth M, Forjaz A, Getz M, Godet I, Kurtoglu F, Lyman M, Metzcar J, Mitchell JT, Raddatz A, Solorzano J, Sundus A, Wang Y, DeNardo DG, Ewald AJ, Gilkes DM, Kagohara LT, Kiemen AL, Thompson ED, Wirtz D, Wood LD, Wu PH, Zaidi N, Zheng L, Zimmerman JW, Phillip JM, Jaffee EM, Gray JW, Coussens LM, Chang YH, Heiser LM, Stein-O'Brien GL, Fertig EJ, Macklin P. Johnson JAI, et al. Among authors: heiser lm. Cell. 2025 Aug 21;188(17):4711-4733.e37. doi: 10.1016/j.cell.2025.06.048. Epub 2025 Jul 26. Cell. 2025. PMID: 40713951 Free article.
How Machine Learning Will Transform Biomedicine.
Goecks J, Jalili V, Heiser LM, Gray JW. Goecks J, et al. Among authors: heiser lm. Cell. 2020 Apr 2;181(1):92-101. doi: 10.1016/j.cell.2020.03.022. Cell. 2020. PMID: 32243801 Free PMC article. Review.
MYC Deregulation and PTEN Loss Model Tumor and Stromal Heterogeneity of Aggressive Triple-Negative Breast Cancer.
Doha ZO, Wang X, Calistri NL, Eng J, Daniel CJ, Ternes L, Kim EN, Pelz C, Munks M, Betts C, Kwon S, Bucher E, Li X, Waugh T, Tatarova Z, Blumberg D, Ko A, Kirchberger N, Pietenpol JA, Sanders ME, Langer EM, Dai MS, Mills G, Chin K, Chang YH, Coussens LM, Gray JW, Heiser LM, Sears RC. Doha ZO, et al. Among authors: heiser lm. Nat Commun. 2023 Sep 13;14(1):5665. doi: 10.1038/s41467-023-40841-6. Nat Commun. 2023. PMID: 37704631 Free PMC article.
Inferring causal molecular networks: empirical assessment through a community-based effort.
Hill SM, Heiser LM, Cokelaer T, Unger M, Nesser NK, Carlin DE, Zhang Y, Sokolov A, Paull EO, Wong CK, Graim K, Bivol A, Wang H, Zhu F, Afsari B, Danilova LV, Favorov AV, Lee WS, Taylor D, Hu CW, Long BL, Noren DP, Bisberg AJ; HPN-DREAM Consortium; Mills GB, Gray JW, Kellen M, Norman T, Friend S, Qutub AA, Fertig EJ, Guan Y, Song M, Stuart JM, Spellman PT, Koeppl H, Stolovitzky G, Saez-Rodriguez J, Mukherjee S. Hill SM, et al. Among authors: heiser lm. Nat Methods. 2016 Apr;13(4):310-8. doi: 10.1038/nmeth.3773. Epub 2016 Feb 22. Nat Methods. 2016. PMID: 26901648 Free PMC article.
Community assessment of methods to deconvolve cellular composition from bulk gene expression.
White BS, de Reyniès A, Newman AM, Waterfall JJ, Lamb A, Petitprez F, Lin Y, Yu R, Guerrero-Gimenez ME, Domanskyi S, Monaco G, Chung V, Banerjee J, Derrick D, Valdeolivas A, Li H, Xiao X, Wang S, Zheng F, Yang W, Catania CA, Lang BJ, Bertus TJ, Piermarocchi C, Caruso FP, Ceccarelli M, Yu T, Guo X, Bletz J, Coller J, Maecker H, Duault C, Shokoohi V, Patel S, Liliental JE, Simon S; Tumor Deconvolution DREAM Challenge consortium; Saez-Rodriguez J, Heiser LM, Guinney J, Gentles AJ. White BS, et al. Among authors: heiser lm. Nat Commun. 2024 Aug 27;15(1):7362. doi: 10.1038/s41467-024-50618-0. Nat Commun. 2024. PMID: 39191725 Free PMC article.
A community computational challenge to predict the activity of pairs of compounds.
Bansal M, Yang J, Karan C, Menden MP, Costello JC, Tang H, Xiao G, Li Y, Allen J, Zhong R, Chen B, Kim M, Wang T, Heiser LM, Realubit R, Mattioli M, Alvarez MJ, Shen Y; NCI-DREAM Community; Gallahan D, Singer D, Saez-Rodriguez J, Xie Y, Stolovitzky G, Califano A; NCI-DREAM Community. Bansal M, et al. Among authors: heiser lm. Nat Biotechnol. 2014 Dec;32(12):1213-22. doi: 10.1038/nbt.3052. Epub 2014 Nov 17. Nat Biotechnol. 2014. PMID: 25419740 Free PMC article.
A community effort to assess and improve drug sensitivity prediction algorithms.
Costello JC, Heiser LM, Georgii E, Gönen M, Menden MP, Wang NJ, Bansal M, Ammad-ud-din M, Hintsanen P, Khan SA, Mpindi JP, Kallioniemi O, Honkela A, Aittokallio T, Wennerberg K; NCI DREAM Community; Collins JJ, Gallahan D, Singer D, Saez-Rodriguez J, Kaski S, Gray JW, Stolovitzky G. Costello JC, et al. Among authors: heiser lm. Nat Biotechnol. 2014 Dec;32(12):1202-12. doi: 10.1038/nbt.2877. Epub 2014 Jun 1. Nat Biotechnol. 2014. PMID: 24880487 Free PMC article.
Live Cell Lineage Tracing of Dormant Cancer Cells.
Kim H, Wirasaputra A, Mohammadi F, Kundu AN, Esteves JAE, Heiser LM, Meyer AS, Peyton SR. Kim H, et al. Among authors: heiser lm. Adv Healthc Mater. 2023 Jun;12(14):e2202275. doi: 10.1002/adhm.202202275. Epub 2023 Jan 20. Adv Healthc Mater. 2023. PMID: 36625629 Free PMC article.
89 results