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60 results

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Page 1
Linking the resistome and plasmidome to the microbiome.
Stalder T, Press MO, Sullivan S, Liachko I, Top EM. Stalder T, et al. Among authors: liachko i. ISME J. 2019 Oct;13(10):2437-2446. doi: 10.1038/s41396-019-0446-4. Epub 2019 May 30. ISME J. 2019. PMID: 31147603 Free PMC article.
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities.
Bickhart DM, Kolmogorov M, Tseng E, Portik DM, Korobeynikov A, Tolstoganov I, Uritskiy G, Liachko I, Sullivan ST, Shin SB, Zorea A, Andreu VP, Panke-Buisse K, Medema MH, Mizrahi I, Pevzner PA, Smith TPL. Bickhart DM, et al. Among authors: liachko i. Nat Biotechnol. 2022 May;40(5):711-719. doi: 10.1038/s41587-021-01130-z. Epub 2022 Jan 3. Nat Biotechnol. 2022. PMID: 34980911
The prototypic crAssphage is a linear phage-plasmid.
Schmidtke DT, Hickey AS, Wirbel J, Lin JD, Liachko I, Sherlock G, Bhatt AS. Schmidtke DT, et al. Among authors: liachko i. Cell Host Microbe. 2025 Aug 13;33(8):1347-1362.e5. doi: 10.1016/j.chom.2025.07.004. Epub 2025 Jul 28. Cell Host Microbe. 2025. PMID: 40730160 Free PMC article.
Comparative genomics of the parasite Trichomonas vaginalis reveals genes involved in spillover from birds to humans.
Sullivan SA, Orosco JC, Callejas-Hernández F, Blow F, Lee H, Ranallo-Benavidez TR, Peters A, Raidal SR, Girard YA, Johnson CK, Rogers KH, Gerhold R, Mangelson H, Liachko I, Srivastava H, Chandler C, Berenberg D, Bonneau RA, Huang PJ, Yeh YM, Lee CC, Liu H, Chen TW, Tang P, Chiu CH, Schatz MC, Carlton JM. Sullivan SA, et al. Among authors: liachko i. Nat Commun. 2025 Jul 24;16(1):6487. doi: 10.1038/s41467-025-61483-w. Nat Commun. 2025. PMID: 40707449 Free PMC article.
Evolution of protein phosphorylation across 18 fungal species.
Studer RA, Rodriguez-Mias RA, Haas KM, Hsu JI, Viéitez C, Solé C, Swaney DL, Stanford LB, Liachko I, Böttcher R, Dunham MJ, de Nadal E, Posas F, Beltrao P, Villén J. Studer RA, et al. Among authors: liachko i. Science. 2016 Oct 14;354(6309):229-232. doi: 10.1126/science.aaf2144. Science. 2016. PMID: 27738172
Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C.
Kronenberg ZN, Rhie A, Koren S, Concepcion GT, Peluso P, Munson KM, Porubsky D, Kuhn K, Mueller KA, Low WY, Hiendleder S, Fedrigo O, Liachko I, Hall RJ, Phillippy AM, Eichler EE, Williams JL, Smith TPL, Jarvis ED, Sullivan ST, Kingan SB. Kronenberg ZN, et al. Among authors: liachko i. Nat Commun. 2021 Apr 28;12(1):1935. doi: 10.1038/s41467-020-20536-y. Nat Commun. 2021. PMID: 33911078 Free PMC article.
60 results