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Page 1
Showing results for loci r
Search for Loic R instead (1 results)
Powerful Identification of Large Quantitative Trait Loci Using Genome-Wide R/glmnet-Based Regression.
Yang L, Qu Q, Hao Z, Sha K, Li Z, Li S. Yang L, et al. J Hered. 2022 Jul 23;113(4):472-478. doi: 10.1093/jhered/esac006. J Hered. 2022. PMID: 35134967
R/glmnet has been successfully applied to jointly mapped multiple quantitative trait loci for linkage analysis, along with statistical inference for quantitative trait loci candidates with nonzero genetic effects using R/lm for normally distributed tra …
R/glmnet has been successfully applied to jointly mapped multiple quantitative trait loci for linkage analysis, along with sta …
R-Loci Arrangement Versus Downy and Powdery Mildew Resistance Level: A Vitis Hybrid Survey.
Zini E, Dolzani C, Stefanini M, Gratl V, Bettinelli P, Nicolini D, Betta G, Dorigatti C, Velasco R, Letschka T, Vezzulli S. Zini E, et al. Int J Mol Sci. 2019 Jul 18;20(14):3526. doi: 10.3390/ijms20143526. Int J Mol Sci. 2019. PMID: 31323823 Free PMC article.
In addition to the true-to-type analysis, an exhaustive genetic characterization was carried out at the 11 reliable mildew resistance (R) loci available in the literature to date. Our findings highlight the pyramiding of R-loci against downy mildew in …
In addition to the true-to-type analysis, an exhaustive genetic characterization was carried out at the 11 reliable mildew resistance (R …
postQTL: a QTL mapping R workflow to improve the accuracy of true positive loci identification.
Bhandari P, Lee TG. Bhandari P, et al. BMC Res Notes. 2022 May 4;15(1):153. doi: 10.1186/s13104-022-06017-z. BMC Res Notes. 2022. PMID: 35509088 Free PMC article.
OBJECTIVE: The determination of the location of quantitative trait loci (QTL) (i.e., QTL mapping) is essential for identifying new genes. Various statistical methods are being incorporated into different QTL mapping functions. ...RESULTS: To address this issue, we develope …
OBJECTIVE: The determination of the location of quantitative trait loci (QTL) (i.e., QTL mapping) is essential for identifying new ge …
mixIndependR: a R package for statistical independence testing of loci in database of multi-locus genotypes.
Song B, Woerner AE, Planz J. Song B, et al. BMC Bioinformatics. 2021 Jan 6;22(1):12. doi: 10.1186/s12859-020-03945-0. BMC Bioinformatics. 2021. PMID: 33407074 Free PMC article.
By comparing the observed distribution of two common summary statistics (the number of heterozygous loci [K] and the number of share alleles [X]) with their expected distributions under the assumption of mutual independence, the overall independence is tested. ...Applicati …
By comparing the observed distribution of two common summary statistics (the number of heterozygous loci [K] and the number of share …
Pseudoreplication in genomic-scale data sets.
Waples RS, Waples RK, Ward EJ. Waples RS, et al. Mol Ecol Resour. 2022 Feb;22(2):503-518. doi: 10.1111/1755-0998.13482. Epub 2021 Sep 7. Mol Ecol Resour. 2022. PMID: 34351073 Free PMC article.
Here, we measured pseudoreplication (quantified by the ratio df'/df) for a common metric of genetic differentiation (F(ST) ) and a common measure of linkage disequilibrium between pairs of loci (r(2) ). Based on data simulated using models (SLiM and msprime) that al …
Here, we measured pseudoreplication (quantified by the ratio df'/df) for a common metric of genetic differentiation (F(ST) ) and a common me …
Convergent evolution of linked mating-type loci in basidiomycete fungi.
Sun S, Coelho MA, Heitman J, Nowrousian M. Sun S, et al. PLoS Genet. 2019 Sep 6;15(9):e1008365. doi: 10.1371/journal.pgen.1008365. eCollection 2019 Sep. PLoS Genet. 2019. PMID: 31490920 Free PMC article.
Mating compatibility in fungi is governed by the mating type (MAT) loci. In basidiomycetes, the ancestral state is hypothesized to be tetrapolar, with two genetically unlinked MAT loci containing homeodomain transcription factor genes (HD locus) and pheromone and ph …
Mating compatibility in fungi is governed by the mating type (MAT) loci. In basidiomycetes, the ancestral state is hypothesized to be …
From Loci to Biology: Functional Genomics of Genome-Wide Association for Coronary Disease.
Nurnberg ST, Zhang H, Hand NJ, Bauer RC, Saleheen D, Reilly MP, Rader DJ. Nurnberg ST, et al. Circ Res. 2016 Feb 19;118(4):586-606. doi: 10.1161/CIRCRESAHA.115.306464. Circ Res. 2016. PMID: 26892960 Free PMC article. Review.
Genome-wide association studies have provided a rich collection of 58 coronary artery disease (CAD) loci that suggest the existence of previously unsuspected new biology relevant to atherosclerosis. ...There are several tools that can be used for investigation of the funct …
Genome-wide association studies have provided a rich collection of 58 coronary artery disease (CAD) loci that suggest the existence o …
The effect of the r a and r b loci on the lipid content of the seed of Pisum sativum.
Coxon DT, Davies DR. Coxon DT, et al. Theor Appl Genet. 1982 Mar;64(1):47-50. doi: 10.1007/BF00303649. Theor Appl Genet. 1982. PMID: 24264823
The lipid content of seed from a set of isogenic lines for the R a : r a locus has been determined; the results show that this locus as well as affecting the starch, sugar and storage protein content and composition, also has a marked effect on the lipid content of …
The lipid content of seed from a set of isogenic lines for the R a : r a locus has been determined; the results show that this …
R/qtl: high-throughput multiple QTL mapping.
Arends D, Prins P, Jansen RC, Broman KW. Arends D, et al. Bioinformatics. 2010 Dec 1;26(23):2990-2. doi: 10.1093/bioinformatics/btq565. Epub 2010 Oct 21. Bioinformatics. 2010. PMID: 20966004 Free PMC article.
MOTIVATION: R/qtl is free and powerful software for mapping and exploring quantitative trait loci (QTL). ...R/qtl can be installed from http://www.rqtl.org/. R/qtl queries should be directed at the mailing list, see http://www.rqtl.org/list/. ...
MOTIVATION: R/qtl is free and powerful software for mapping and exploring quantitative trait loci (QTL). ...R/qtl can b …
Polymorphism in two short tandem repeat loci (R-R and S-Q) linked to tRNA genes in Entamoeba dispar isolates.
Nazemalhosseini Mojarad E, Azimirad M, Bayat M, Hellaly A, Aghdaei HA, Shalmani HM. Nazemalhosseini Mojarad E, et al. Gastroenterol Hepatol Bed Bench. 2012 Fall;5(4):202-8. Gastroenterol Hepatol Bed Bench. 2012. PMID: 24834227 Free PMC article.
AIM: In this study, genetic polymorphism of two tRNA-liked short tandem repeat (STR)-containing loci, R-R and S-Q, was analyzed in order to clarify further the genotypic differences among E. dispar isolates. ...RESULTS: Sequence analysis showed 9 and 6 differ …
AIM: In this study, genetic polymorphism of two tRNA-liked short tandem repeat (STR)-containing loci, R-R and S-Q, was …
10,704 results
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