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Page 1
Orthology inference at scale with FastOMA.
Majidian S, Nevers Y, Yazdizadeh Kharrazi A, Warwick Vesztrocy A, Pascarelli S, Moi D, Glover N, Altenhoff AM, Dessimoz C. Majidian S, et al. Among authors: nevers y. Nat Methods. 2025 Feb;22(2):269-272. doi: 10.1038/s41592-024-02552-8. Epub 2025 Jan 3. Nat Methods. 2025. PMID: 39753922 Free PMC article.
From pairwise to multiple spliced alignment.
Jammali S, Djossou A, Ouédraogo WDD, Nevers Y, Chegrane I, Ouangraoua A. Jammali S, et al. Among authors: nevers y. Bioinform Adv. 2022 Jan 5;2(1):vbab044. doi: 10.1093/bioadv/vbab044. eCollection 2022. Bioinform Adv. 2022. PMID: 36699392 Free PMC article.
OrthoInspector 3.0: open portal for comparative genomics.
Nevers Y, Kress A, Defosset A, Ripp R, Linard B, Thompson JD, Poch O, Lecompte O. Nevers Y, et al. Nucleic Acids Res. 2019 Jan 8;47(D1):D411-D418. doi: 10.1093/nar/gky1068. Nucleic Acids Res. 2019. PMID: 30380106 Free PMC article.
The Quest for Orthologs orthology benchmark service in 2022.
Nevers Y, Jones TEM, Jyothi D, Yates B, Ferret M, Portell-Silva L, Codo L, Cosentino S, Marcet-Houben M, Vlasova A, Poidevin L, Kress A, Hickman M, Persson E, Piližota I, Guijarro-Clarke C; OpenEBench team the Quest for Orthologs Consortium; Iwasaki W, Lecompte O, Sonnhammer E, Roos DS, Gabaldón T, Thybert D, Thomas PD, Hu Y, Emms DM, Bruford E, Capella-Gutierrez S, Martin MJ, Dessimoz C, Altenhoff A. Nevers Y, et al. Nucleic Acids Res. 2022 Jul 5;50(W1):W623-W632. doi: 10.1093/nar/gkac330. Nucleic Acids Res. 2022. PMID: 35552456 Free PMC article.
How to build phylogenetic species trees with OMA.
Dylus D, Nevers Y, Altenhoff AM, Gürtler A, Dessimoz C, Glover NM. Dylus D, et al. Among authors: nevers y. F1000Res. 2020 Jun 4;9:511. doi: 10.12688/f1000research.23790.2. eCollection 2020. F1000Res. 2020. PMID: 35722083 Free PMC article.
Ten Years of Collaborative Progress in the Quest for Orthologs.
Linard B, Ebersberger I, McGlynn SE, Glover N, Mochizuki T, Patricio M, Lecompte O, Nevers Y, Thomas PD, Gabaldón T, Sonnhammer E, Dessimoz C, Uchiyama I; QFO Consortium. Linard B, et al. Among authors: nevers y. Mol Biol Evol. 2021 Jul 29;38(8):3033-3045. doi: 10.1093/molbev/msab098. Mol Biol Evol. 2021. PMID: 33822172 Free PMC article.
New developments for the Quest for Orthologs benchmark service.
Altenhoff A, Nevers Y, Tran V, Jyothi D, Martin M, Cosentino S, Majidian S, Marcet-Houben M, Fuentes-Palacios D, Persson E, Walsh T, Lecompte O, Gabaldón T, Kelly S, Hu Y, Iwasaki W, Capella-Gutierrez S, Dessimoz C, Thomas PD, Ebersberger I, Sonnhammer E. Altenhoff A, et al. Among authors: nevers y. NAR Genom Bioinform. 2024 Dec 11;6(4):lqae167. doi: 10.1093/nargab/lqae167. eCollection 2024 Dec. NAR Genom Bioinform. 2024. PMID: 39664814 Free PMC article.
21 results