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Page 1
In PD-1+ human colon cancer cells NIVOLUMAB promotes survival and could protect tumor cells from conventional therapies.
Ieranò C, Righelli D, D'Alterio C, Napolitano M, Portella L, Rea G, Auletta F, Santagata S, Trotta AM, Guardascione G, Liotti F, Prevete N, Maiolino P, Luciano A, Barbieri A, Di Mauro A, Roma C, Esposito Abate R, Tatangelo F, Pacelli R, Normanno N, Melillo RM, Scala S. Ieranò C, et al. Among authors: righelli d. J Immunother Cancer. 2022 Mar;10(3):e004032. doi: 10.1136/jitc-2021-004032. J Immunother Cancer. 2022. PMID: 35246475 Free PMC article.
Designing spatial transcriptomic experiments.
Righelli D, Sottosanti A, Risso D. Righelli D, et al. Nat Methods. 2023 Mar;20(3):355-356. doi: 10.1038/s41592-023-01801-6. Nat Methods. 2023. PMID: 36864198 No abstract available.
Defining and benchmarking open problems in single-cell analysis.
Luecken MD, Gigante S, Burkhardt DB, Cannoodt R, Strobl DC, Markov NS, Zappia L, Palla G, Lewis W, Dimitrov D, Vinyard ME, Magruder DS, Mueller MF, Andersson A, Dann E, Qin Q, Otto DJ, Klein M, Botvinnik OB, Deconinck L, Waldrant K, Yasa SN, Szałata A, Benz A, Li Z; Open Problems Jamboree Members; Bloom JM, Pisco AO, Saez-Rodriguez J, Wulsin D, Pinello L, Saeys Y, Theis FJ, Krishnaswamy S. Luecken MD, et al. Nat Biotechnol. 2025 Jul;43(7):1035-1040. doi: 10.1038/s41587-025-02694-w. Nat Biotechnol. 2025. PMID: 40595413 No abstract available.
robin2: accelerating single-cell data clustering evaluation.
Policastro V, Righelli D, Cutillo L, Carissimo A. Policastro V, et al. Among authors: righelli d. Bioinform Adv. 2025 Aug 6;5(1):vbaf184. doi: 10.1093/bioadv/vbaf184. eCollection 2025. Bioinform Adv. 2025. PMID: 40799494 Free PMC article.
Curated single cell multimodal landmark datasets for R/Bioconductor.
Eckenrode KB, Righelli D, Ramos M, Argelaguet R, Vanderaa C, Geistlinger L, Culhane AC, Gatto L, Carey V, Morgan M, Risso D, Waldron L. Eckenrode KB, et al. Among authors: righelli d. PLoS Comput Biol. 2023 Aug 25;19(8):e1011324. doi: 10.1371/journal.pcbi.1011324. eCollection 2023 Aug. PLoS Comput Biol. 2023. PMID: 37624866 Free PMC article.
Bioconductor's Computational Ecosystem for Genomic Data Science in Cancer.
Ramos M, Shepherd L, Sheffield NC, Mahmoud A, Pagès H, Wokaty A, Righelli D, Risso D, Davis S, Oh S, Waldron L, Morgan M, Carey V. Ramos M, et al. Among authors: righelli d. Methods Mol Biol. 2025;2932:1-46. doi: 10.1007/978-1-0716-4566-6_1. Methods Mol Biol. 2025. PMID: 40779102 Review.
Community-wide hackathons to identify central themes in single-cell multi-omics.
Lê Cao KA, Abadi AJ, Davis-Marcisak EF, Hsu L, Arora A, Coullomb A, Deshpande A, Feng Y, Jeganathan P, Loth M, Meng C, Mu W, Pancaldi V, Sankaran K, Righelli D, Singh A, Sodicoff JS, Stein-O'Brien GL, Subramanian A, Welch JD, You Y, Argelaguet R, Carey VJ, Dries R, Greene CS, Holmes S, Love MI, Ritchie ME, Yuan GC, Culhane AC, Fertig E. Lê Cao KA, et al. Among authors: righelli d. Genome Biol. 2021 Aug 5;22(1):220. doi: 10.1186/s13059-021-02433-9. Genome Biol. 2021. PMID: 34353350 Free PMC article. No abstract available.
A Global Transcriptional Atlas of the Effect of Sleep Deprivation in the Mouse Frontal Cortex.
Ford K, Zuin E, Righelli D, Medina E, Schoch H, Singletary K, Muheim C, Frank MG, Hicks SC, Risso D, Peixoto L. Ford K, et al. Among authors: righelli d. bioRxiv [Preprint]. 2023 Nov 28:2023.11.28.569011. doi: 10.1101/2023.11.28.569011. bioRxiv. 2023. Update in: iScience. 2024 Aug 17;27(9):110752. doi: 10.1016/j.isci.2024.110752. PMID: 38076891 Free PMC article. Updated. Preprint.
22 results