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scTrends: A living review of commercial single-cell and spatial 'omic technologies.
De Jonghe J, Opzoomer JW, Vilas-Zornoza A, Nilges BS, Crane P, Vicari M, Lee H, Lara-Astiaso D, Gross T, Morf J, Schneider K, Cudini J, Ramos-Mucci L, Mooijman D, Tiklová K, Salas SM, Langseth CM, Kashikar ND; scTrends Consortium; Schapiro D, Lundeberg J, Nilsson M, Shalek AK, Cribbs AP, Taylor-King JP. De Jonghe J, et al. Cell Genom. 2024 Dec 11;4(12):100723. doi: 10.1016/j.xgen.2024.100723. Cell Genom. 2024. PMID: 39667347 Free PMC article. Review.
RECOVER identifies synergistic drug combinations in vitro through sequential model optimization.
Bertin P, Rector-Brooks J, Sharma D, Gaudelet T, Anighoro A, Gross T, Martínez-Peña F, Tang EL, Suraj MS, Regep C, Hayter JBR, Korablyov M, Valiante N, van der Sloot A, Tyers M, Roberts CES, Bronstein MM, Lairson LL, Taylor-King JP, Bengio Y. Bertin P, et al. Among authors: roberts ces. Cell Rep Methods. 2023 Oct 23;3(10):100599. doi: 10.1016/j.crmeth.2023.100599. Epub 2023 Oct 4. Cell Rep Methods. 2023. PMID: 37797618 Free PMC article.
A community effort to track commercial single-cell and spatial 'omic technologies and business trends.
De Jonghe J, Opzoomer JW, Vilas-Zornoza A, Crane P, Nilges BS, Vicari M, Lee H, Lara-Astiaso D, Gross T, Morf J, Schneider K, Cudini J, Ramos-Mucci L, Mooijman D, Tiklová K, Salas SM, Langseth CM, Kashikar ND, Roberts CES; scTrends Consortium; Lundeberg J, Nilsson M, Shalek AK, Cribbs AP, Taylor-King JP. De Jonghe J, et al. Among authors: roberts ces. Nat Biotechnol. 2024 Jul;42(7):1017-1023. doi: 10.1038/s41587-024-02305-0. Nat Biotechnol. 2024. PMID: 39020213 No abstract available.
Inference of transcription factor binding from cell-free DNA enables tumor subtype prediction and early detection.
Ulz P, Perakis S, Zhou Q, Moser T, Belic J, Lazzeri I, Wölfler A, Zebisch A, Gerger A, Pristauz G, Petru E, White B, Roberts CES, John JS, Schimek MG, Geigl JB, Bauernhofer T, Sill H, Bock C, Heitzer E, Speicher MR. Ulz P, et al. Among authors: roberts ces. Nat Commun. 2019 Oct 11;10(1):4666. doi: 10.1038/s41467-019-12714-4. Nat Commun. 2019. PMID: 31604930 Free PMC article.
Publisher Correction: Inference of transcription factor binding from cell-free DNA enables tumor subtype prediction and early detection.
Ulz P, Perakis S, Zhou Q, Moser T, Belic J, Lazzeri I, Wölfler A, Zebisch A, Gerger A, Pristauz G, Petru E, White B, Roberts CES, John JS, Schimek MG, Geigl JB, Bauernhofer T, Sill H, Bock C, Heitzer E, Speicher MR. Ulz P, et al. Among authors: roberts ces. Nat Commun. 2020 Apr 20;11(1):1965. doi: 10.1038/s41467-020-15799-4. Nat Commun. 2020. PMID: 32313081 Free PMC article.