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Single-cell transcriptional profiles in human skeletal muscle.
Rubenstein AB, Smith GR, Raue U, Begue G, Minchev K, Ruf-Zamojski F, Nair VD, Wang X, Zhou L, Zaslavsky E, Trappe TA, Trappe S, Sealfon SC. Rubenstein AB, et al. Sci Rep. 2020 Jan 14;10(1):229. doi: 10.1038/s41598-019-57110-6. Sci Rep. 2020. PMID: 31937892 Free PMC article.
Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data.
Chen X, Wang Y, Cappuccio A, Cheng WS, Zamojski FR, Nair VD, Miller CM, Rubenstein AB, Nudelman G, Tadych A, Theesfeld CL, Vornholt A, George MC, Ruffin F, Dagher M, Chawla DG, Soares-Schanoski A, Spurbeck RR, Ndhlovu LC, Sebra R, Kleinstein SH, Letizia AG, Ramos I, Fowler VG Jr, Woods CW, Zaslavsky E, Troyanskaya OG, Sealfon SC. Chen X, et al. Among authors: rubenstein ab. Nat Comput Sci. 2023 Jul;3(7):644-657. doi: 10.1038/s43588-023-00476-5. Epub 2023 Jul 25. Nat Comput Sci. 2023. PMID: 37974651 Free PMC article.
Innate immune molecular landscape following controlled human influenza virus infection.
Thistlethwaite W, Vangeti S, Cheng WS, Agarwal P, Cappuccio A, Wang W, Wei B, Myers R, Rubenstein AB, Chawla D, Hariharan M, McClain MT, Burke TW, Kleinstein SH, Ecker JR, Woods CW, Greenleaf WJ, Chen X, Ramos I, Zaslavsky E, Evans TG, Troyanskaya OG, Sealfon SC. Thistlethwaite W, et al. Among authors: rubenstein ab. Cell Rep. 2025 Oct 28;44(10):116312. doi: 10.1016/j.celrep.2025.116312. Epub 2025 Sep 16. Cell Rep. 2025. PMID: 40966076 Free article.
Integrated single-cell multiome analysis reveals muscle fiber-type gene regulatory circuitry modulated by endurance exercise.
Rubenstein AB, Smith GR, Zhang Z, Chen X, Chambers TL, Ruf-Zamojski F, Mendelev N, Cheng WS, Zamojski M, Amper MAS, Nair VD, Marderstein AR, Montgomery SB, Troyanskaya OG, Zaslavsky E, Trappe T, Trappe S, Sealfon SC. Rubenstein AB, et al. bioRxiv [Preprint]. 2023 Oct 9:2023.09.26.558914. doi: 10.1101/2023.09.26.558914. bioRxiv. 2023. Update in: Genome Res. 2025 Jul 1;35(7):1664-1677. doi: 10.1101/gr.280051.124. PMID: 37808658 Free PMC article. Updated. Preprint.
Author Correction: Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data.
Chen X, Wang Y, Cappuccio A, Cheng WS, Zamojski FR, Nair VD, Miller CM, Rubenstein AB, Nudelman G, Tadych A, Theesfeld CL, Vornholt A, George MC, Ruffin F, Dagher M, Chawla DG, Soares-Schanoski A, Spurbeck RR, Ndhlovu LC, Sebra R, Kleinstein SH, Letizia AG, Ramos I, Fowler VG Jr, Woods CW, Zaslavsky E, Troyanskaya OG, Sealfon SC. Chen X, et al. Among authors: rubenstein ab. Nat Comput Sci. 2023 Sep;3(9):805. doi: 10.1038/s43588-023-00523-1. Nat Comput Sci. 2023. PMID: 38177788 Free PMC article. No abstract available.
Skeletal muscle transcriptome response to a bout of endurance exercise in physically active and sedentary older adults.
Rubenstein AB, Hinkley JM, Nair VD, Nudelman G, Standley RA, Yi F, Yu G, Trappe TA, Bamman MM, Trappe SW, Sparks LM, Goodpaster BH, Vega RB, Sealfon SC, Zaslavsky E, Coen PM. Rubenstein AB, et al. Am J Physiol Endocrinol Metab. 2022 Mar 1;322(3):E260-E277. doi: 10.1152/ajpendo.00378.2021. Epub 2022 Jan 24. Am J Physiol Endocrinol Metab. 2022. PMID: 35068187 Free PMC article.
23 results