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Year Number of Results
2005 1
2007 1
2008 4
2009 4
2010 1
2011 1
2012 5
2013 2
2014 3
2015 2
2016 2
2017 3
2018 2
2019 4
2020 7
2021 22
2022 17
2023 13
2024 12
2025 8

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100 results

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Page 1
Evolution and host-specific adaptation of Pseudomonas aeruginosa.
Weimann A, Dinan AM, Ruis C, Bernut A, Pont S, Brown K, Ryan J, Santos L, Ellison L, Ukor E, Pandurangan AP, Krokowski S, Blundell TL, Welch M, Blane B, Judge K, Bousfield R, Brown N, Bryant JM, Kukavica-Ibrulj I, Rampioni G, Leoni L, Harrison PT, Peacock SJ, Thomson NR, Gauthier J, Fothergill JL, Levesque RC, Parkhill J, Floto RA. Weimann A, et al. Among authors: ruis c. Science. 2024 Jul 5;385(6704):eadi0908. doi: 10.1126/science.adi0908. Epub 2024 Jul 5. Science. 2024. PMID: 38963857
Stepwise pathogenic evolution of Mycobacterium abscessus.
Bryant JM, Brown KP, Burbaud S, Everall I, Belardinelli JM, Rodriguez-Rincon D, Grogono DM, Peterson CM, Verma D, Evans IE, Ruis C, Weimann A, Arora D, Malhotra S, Bannerman B, Passemar C, Templeton K, MacGregor G, Jiwa K, Fisher AJ, Blundell TL, Ordway DJ, Jackson M, Parkhill J, Floto RA. Bryant JM, et al. Among authors: ruis c. Science. 2021 Apr 30;372(6541):eabb8699. doi: 10.1126/science.abb8699. Science. 2021. PMID: 33926925 Free PMC article.
Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus below the Subgroup Level.
Goya S, Ruis C, Neher RA, Meijer A, Aziz A, Hinrichs AS, von Gottberg A, Roemer C, Amoako DG, Acuña D, McBroome J, Otieno JR, Bhiman JN, Everatt J, Muñoz-Escalante JC, Ramaekers K, Duggan K, Presser LD, Urbanska L, Venter M, Wolter N, Peret TCT, Salimi V, Potdar V, Borges V, Viegas M. Goya S, et al. Among authors: ruis c. Emerg Infect Dis. 2024 Aug;30(8):1631-1641. doi: 10.3201/eid3008.240209. Emerg Infect Dis. 2024. PMID: 39043393 Free PMC article.
Global genomic surveillance of monkeypox virus.
Otieno JR, Ruis C, Onoja AB, Kuppalli K, Hoxha A, Nitsche A, Brinkmann A, Michel J, Mbala-Kingebeni P, Mukadi-Bamuleka D, Osman MM, Hussein H, Raja MA, Fotsing R, Herring BL, Keita M, Rico JM, Gresh L, Barakat A, Katawera V, Nahapetyan K, Naidoo D, Floto RA, Cunningham J, Van Kerkhove MD, Lewis RF, Subissi L. Otieno JR, et al. Among authors: ruis c. Nat Med. 2025 Jan;31(1):342-350. doi: 10.1038/s41591-024-03370-3. Epub 2024 Oct 23. Nat Med. 2025. PMID: 39442559 Free PMC article.
SARS-CoV-2 evolution during treatment of chronic infection.
Kemp SA, Collier DA, Datir RP, Ferreira IATM, Gayed S, Jahun A, Hosmillo M, Rees-Spear C, Mlcochova P, Lumb IU, Roberts DJ, Chandra A, Temperton N; CITIID-NIHR BioResource COVID-19 Collaboration; COVID-19 Genomics UK (COG-UK) Consortium; Sharrocks K, Blane E, Modis Y, Leigh KE, Briggs JAG, van Gils MJ, Smith KGC, Bradley JR, Smith C, Doffinger R, Ceron-Gutierrez L, Barcenas-Morales G, Pollock DD, Goldstein RA, Smielewska A, Skittrall JP, Gouliouris T, Goodfellow IG, Gkrania-Klotsas E, Illingworth CJR, McCoy LE, Gupta RK. Kemp SA, et al. Nature. 2021 Apr;592(7853):277-282. doi: 10.1038/s41586-021-03291-y. Epub 2021 Feb 5. Nature. 2021. PMID: 33545711 Free PMC article.
SARS-CoV-2 evolution in the Omicron era.
Roemer C, Sheward DJ, Hisner R, Gueli F, Sakaguchi H, Frohberg N, Schoenmakers J, Sato K, O'Toole Á, Rambaut A, Pybus OG, Ruis C, Murrell B, Peacock TP. Roemer C, et al. Among authors: ruis c. Nat Microbiol. 2023 Nov;8(11):1952-1959. doi: 10.1038/s41564-023-01504-w. Epub 2023 Oct 16. Nat Microbiol. 2023. PMID: 37845314 Review.
Progress and challenges in virus genomic epidemiology.
Hill V, Ruis C, Bajaj S, Pybus OG, Kraemer MUG. Hill V, et al. Among authors: ruis c. Trends Parasitol. 2021 Dec;37(12):1038-1049. doi: 10.1016/j.pt.2021.08.007. Epub 2021 Oct 4. Trends Parasitol. 2021. PMID: 34620561 Free article. Review.
A systematic nomenclature for mpox viruses causing outbreaks with sustained human-to-human transmission.
Ruis C, Lusamaki E, O'Toole A, Otieno JR, Colquhoun R, Roemer C, Wawina-Bokalanga T, Tshiani-Mbaya O, Jansen D, Makangara JC, Agrawal A, Abu-Raddad LJ, Ahuka-Mundeke S, Ayouba A, Azhar EI, Caly L, Drosten C, Faria NR, Fowotade A, Hoxha A, Huang B, Korber B, le Polain de Waroux O, Lewis RF, Liesenborghs L, Melhem NM, Munster VJ, Ogoina D, Oude Munnink BB, Peiris JSM, Palacios G, Peeters M, Resende P, Rimoin AW, Saha S, Leo YS, Suzuki T, Vercauteren K, Yadav P, Van Kerkhove MD, Neher R, de Oliveira T, Ulaeto D, Mbala-Kingebeni P, Kindrachuk J, Koopmans MPG, Chand M, von Gottberg A, Subissi L, Rambaut A. Ruis C, et al. Nat Med. 2025 Jul 29. doi: 10.1038/s41591-025-03820-6. Online ahead of print. Nat Med. 2025. PMID: 40731088 No abstract available.
100 results