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Highly accurate assembly polishing with DeepPolisher.
Mastoras M, Asri M, Brambrink L, Hebbar P, Kolesnikov A, Cook DE, Nattestad M, Lucas J, Won TS, Chang PC, Carroll A, Paten B, Shafin K; and the Human Pangenome Reference Consortium. Mastoras M, et al. Genome Res. 2025 Jul 1;35(7):1595-1608. doi: 10.1101/gr.280149.124. Genome Res. 2025. PMID: 40389286
A chromosome-level genome assembly of the mountain lion, Puma concolor.
Supple MA, Escalona M, Alexandre N, Buchalski MR, Riley SPD, Dellinger JA, Vickers TW, Sahasrabudhe R, Nguyen O, Fairbairn CW, Seligmann WE, Wilmers CC, Shapiro B. Supple MA, et al. Among authors: seligmann we. J Hered. 2025 Jul 21;116(4):479-487. doi: 10.1093/jhered/esae063. J Hered. 2025. PMID: 39506490 Free PMC article.
Recent Adaptation in a Threatened Salmonid Revealed by Museum Genomics.
Sharo AG, Supple MA, Cabrera R, Seligmann WE, Sacco S, Columbus CD, Pearse DE, Shapiro B, Garza JC. Sharo AG, et al. Among authors: seligmann we. Mol Ecol. 2025 Sep;34(18):e70063. doi: 10.1111/mec.70063. Epub 2025 Sep 2. Mol Ecol. 2025. PMID: 40891211 Free PMC article.
A haplotype-resolved genome assembly of the bocaccio rockfish, Sebastes paucispinis.
De-Kayne R, Li S, Escalona M, Lou RN, Owens GL, Kolora SRR, Jainese C, Seeto K, McCrea M, Nguyen O, Chumchim N, Sahasrabudhe RM, Fairbairn CW, Green RE, Seligmann WE, Love M, Sudmant PH. De-Kayne R, et al. Among authors: seligmann we. J Hered. 2025 May 5:esaf026. doi: 10.1093/jhered/esaf026. Online ahead of print. J Hered. 2025. PMID: 40323688