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Year Number of Results
2000 1
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172 results

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Page 1
Step-by-Step Bacterial Genome Comparison.
Carhuaricra-Huaman D, Setubal JC. Carhuaricra-Huaman D, et al. Among authors: setubal jc. Methods Mol Biol. 2024;2802:107-134. doi: 10.1007/978-1-0716-3838-5_5. Methods Mol Biol. 2024. PMID: 38819558
Phylogenomics.
Patané JSL, Martins J Jr, Setubal JC. Patané JSL, et al. Among authors: setubal jc. Methods Mol Biol. 2018;1704:103-187. doi: 10.1007/978-1-4939-7463-4_5. Methods Mol Biol. 2018. PMID: 29277865 Review.
Comparative Metagenomics.
Maltez Thomas A, Prata Lima F, Maria Silva Moura L, Maria da Silva A, Dias-Neto E, Setubal JC. Maltez Thomas A, et al. Among authors: setubal jc. Methods Mol Biol. 2018;1704:243-260. doi: 10.1007/978-1-4939-7463-4_8. Methods Mol Biol. 2018. PMID: 29277868
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation.
Thomas AM, Manghi P, Asnicar F, Pasolli E, Armanini F, Zolfo M, Beghini F, Manara S, Karcher N, Pozzi C, Gandini S, Serrano D, Tarallo S, Francavilla A, Gallo G, Trompetto M, Ferrero G, Mizutani S, Shiroma H, Shiba S, Shibata T, Yachida S, Yamada T, Wirbel J, Schrotz-King P, Ulrich CM, Brenner H, Arumugam M, Bork P, Zeller G, Cordero F, Dias-Neto E, Setubal JC, Tett A, Pardini B, Rescigno M, Waldron L, Naccarati A, Segata N. Thomas AM, et al. Among authors: setubal jc. Nat Med. 2019 Apr;25(4):667-678. doi: 10.1038/s41591-019-0405-7. Epub 2019 Apr 1. Nat Med. 2019. PMID: 30936548 Free PMC article.
Editorial: Expert opinions in genomic analysis.
Setubal JC, Paccanaro A. Setubal JC, et al. Front Bioinform. 2025 Jun 19;5:1641083. doi: 10.3389/fbinf.2025.1641083. eCollection 2025. Front Bioinform. 2025. PMID: 40611979 Free PMC article. No abstract available.
Machine learning meets genome assembly.
Padovani de Souza K, Setubal JC, Ponce de Leon F de Carvalho AC, Oliveira G, Chateau A, Alves R. Padovani de Souza K, et al. Among authors: setubal jc. Brief Bioinform. 2019 Nov 27;20(6):2116-2129. doi: 10.1093/bib/bby072. Brief Bioinform. 2019. PMID: 30137230 Review.
Comparative Genomics for Prokaryotes.
Setubal JC, Almeida NF, Wattam AR. Setubal JC, et al. Methods Mol Biol. 2018;1704:55-78. doi: 10.1007/978-1-4939-7463-4_3. Methods Mol Biol. 2018. PMID: 29277863 Review.
Editorial: Computational Methods for Microbiome Analysis.
Setubal JC, Stoye J, Dutilh BE. Setubal JC, et al. Front Genet. 2020 Dec 11;11:623897. doi: 10.3389/fgene.2020.623897. eCollection 2020. Front Genet. 2020. PMID: 33362871 Free PMC article. No abstract available.
Conformational ligand-directed targeting of calcium-dependent receptors in acute trauma.
Pasqualini R, Markosian C, Staquicini DI, Dobroff AS, Dodero-Rojas E, Whitford PC, Barbu EM, Bronk JK, Cardó-Vila M, Christianson DR, Dias-Neto E, Driessen WHP, Guzman-Rojas L, Marchiò S, Nunes DN, de Oliveira FS, Ozawa MG, Proneth B, Rangel R, Smith TL, Souza GR, Staquicini FI, Tang FHF, Baze WB, Setubal JC, Burns JW, Dubick MA, Gelovani JG, Batchinsky AI, Mogford JE, Wade CE, Holcomb JB, Burley SK, Onuchic JN, Arap W. Pasqualini R, et al. Among authors: setubal jc. Med. 2025 Jul 11;6(7):100638. doi: 10.1016/j.medj.2025.100638. Epub 2025 Jul 2. Med. 2025. PMID: 40609540 Free article.
A Guide to Phylogenomic Inference.
Patané JSL, Martins J Jr, Setubal JC. Patané JSL, et al. Among authors: setubal jc. Methods Mol Biol. 2024;2802:267-345. doi: 10.1007/978-1-0716-3838-5_11. Methods Mol Biol. 2024. PMID: 38819564
172 results