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Do we need a standardized 16S rRNA gene amplicon sequencing analysis protocol for poultry microbiota research?
Lyte JM, Seyoum MM, Ayala D, Kers JG, Caputi V, Johnson T, Zhang L, Rehberger J, Zhang G, Dridi S, Hale B, De Oliveira JE, Grum D, Smith AH, Kogut M, Ricke SC, Ballou A, Potter B, Proszkowiec-Weglarz M. Lyte JM, et al. Among authors: seyoum mm. Poult Sci. 2025 Jul;104(7):105242. doi: 10.1016/j.psj.2025.105242. Epub 2025 May 1. Poult Sci. 2025. PMID: 40334389 Free PMC article. Review.
A cost and community perspective on the barriers to microbiome data reuse.
Kelliher JM, Johnson LYD, Rodriguez FE, Saunders JK, Kroeger ME, Hanson B, Robinson AJ, Anthony WE, Van Goethem MW, Kiledal A, Shibl AA, de Andrade AAS, Ettinger CL, Gupta CL, Robinson CRP, Zuniga C, Sprockett D, Machado DT, Skoog EJ, Oduwole I, Rothman JA, Prime K, Lane KR, Lemos LN, Karstens L, McCauley M, Seyoum MM, Elmassry MM, Guzel M, Longley R, Roux S, Pitot TM, Eloe-Fadrosh EA. Kelliher JM, et al. Among authors: seyoum mm. Front Bioinform. 2025 Apr 9;5:1585717. doi: 10.3389/fbinf.2025.1585717. eCollection 2025. Front Bioinform. 2025. PMID: 40270679 Free PMC article.
A roadmap for equitable reuse of public microbiome data.
Hug LA, Hatzenpichler R, Moraru C, Soares AR, Meyer F, Heyder A; Data Reuse Consortium; Probst AJ. Hug LA, et al. Nat Microbiol. 2025 Oct;10(10):2384-2395. doi: 10.1038/s41564-025-02116-2. Epub 2025 Sep 26. Nat Microbiol. 2025. PMID: 41006832 Review.