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53 results

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Page 1
A gentle introduction to pangenomics.
Matthews CA, Watson-Haigh NS, Burton RA, Sheppard AE. Matthews CA, et al. Among authors: sheppard ae. Brief Bioinform. 2024 Sep 23;25(6):bbae588. doi: 10.1093/bib/bbae588. Brief Bioinform. 2024. PMID: 39552065 Free PMC article. Review.
Plassembler: an automated bacterial plasmid assembly tool.
Bouras G, Sheppard AE, Mallawaarachchi V, Vreugde S. Bouras G, et al. Among authors: sheppard ae. Bioinformatics. 2023 Jul 1;39(7):btad409. doi: 10.1093/bioinformatics/btad409. Bioinformatics. 2023. PMID: 37369026 Free PMC article.
Complete genome sequence of the nematicidal Bacillus thuringiensis MYBT18247.
Hollensteiner J, Poehlein A, Spröer C, Bunk B, Sheppard AE, Rosenstiel P, Schulenburg H, Liesegang H. Hollensteiner J, et al. Among authors: sheppard ae. J Biotechnol. 2017 Oct 20;260:48-52. doi: 10.1016/j.jbiotec.2017.09.003. Epub 2017 Sep 9. J Biotechnol. 2017. PMID: 28899808 Free article.
Discordance between different bioinformatic methods for identifying resistance genes from short-read genomic data, with a focus on Escherichia coli.
Davies TJ, Swann J, Sheppard AE, Pickford H, Lipworth S, AbuOun M, Ellington MJ, Fowler PW, Hopkins S, Hopkins KL, Crook DW, Peto TEA, Anjum MF, Walker AS, Stoesser N. Davies TJ, et al. Among authors: sheppard ae. Microb Genom. 2023 Dec;9(12):001151. doi: 10.1099/mgen.0.001151. Microb Genom. 2023. PMID: 38100178 Free PMC article.
Severe infections emerge from commensal bacteria by adaptive evolution.
Young BC, Wu CH, Gordon NC, Cole K, Price JR, Liu E, Sheppard AE, Perera S, Charlesworth J, Golubchik T, Iqbal Z, Bowden R, Massey RC, Paul J, Crook DW, Peto TE, Walker AS, Llewelyn MJ, Wyllie DH, Wilson DJ. Young BC, et al. Among authors: sheppard ae. Elife. 2017 Dec 19;6:e30637. doi: 10.7554/eLife.30637. Elife. 2017. PMID: 29256859 Free PMC article.
Hybracter: Enabling Scalable, Automated, Complete and Accurate Bacterial Genome Assemblies.
Bouras G, Houtak G, Wick RR, Mallawaarachchi V, Roach MJ, Papudeshi B, Judd LM, Sheppard AE, Edwards RA, Vreugde S. Bouras G, et al. Among authors: sheppard ae. bioRxiv [Preprint]. 2024 Apr 11:2023.12.12.571215. doi: 10.1101/2023.12.12.571215. bioRxiv. 2024. Update in: Microb Genom. 2024 May;10(5). doi: 10.1099/mgen.0.001244. PMID: 38168369 Free PMC article. Updated. Preprint.
Reconciling the Potentially Irreconcilable? Genotypic and Phenotypic Amoxicillin-Clavulanate Resistance in Escherichia coli.
Davies TJ, Stoesser N, Sheppard AE, Abuoun M, Fowler P, Swann J, Quan TP, Griffiths D, Vaughan A, Morgan M, Phan HTT, Jeffery KJ, Andersson M, Ellington MJ, Ekelund O, Woodford N, Mathers AJ, Bonomo RA, Crook DW, Peto TEA, Anjum MF, Walker AS. Davies TJ, et al. Among authors: sheppard ae. Antimicrob Agents Chemother. 2020 May 21;64(6):e02026-19. doi: 10.1128/AAC.02026-19. Print 2020 May 21. Antimicrob Agents Chemother. 2020. PMID: 32205351 Free PMC article.
53 results