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Highly accurate assembly polishing with DeepPolisher.
Mastoras M, Asri M, Brambrink L, Hebbar P, Kolesnikov A, Cook DE, Nattestad M, Lucas J, Won TS, Chang PC, Carroll A, Paten B, Shafin K; and the Human Pangenome Reference Consortium. Mastoras M, et al. Genome Res. 2025 Jul 1;35(7):1595-1608. doi: 10.1101/gr.280149.124. Genome Res. 2025. PMID: 40389286
Fast and flexible minimizer digestion with digest.
Zheng A, Lee I, Shivakumar VS, Ahmed OY, Langmead B. Zheng A, et al. Among authors: shivakumar vs. Bioinformatics. 2025 Jul 1;41(7):btaf368. doi: 10.1093/bioinformatics/btaf368. Bioinformatics. 2025. PMID: 40581603 Free PMC article.
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