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2004 2
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Page 1
The complete sequence of a human genome.
Nurk S, Koren S, Rhie A, Rautiainen M, Bzikadze AV, Mikheenko A, Vollger MR, Altemose N, Uralsky L, Gershman A, Aganezov S, Hoyt SJ, Diekhans M, Logsdon GA, Alonge M, Antonarakis SE, Borchers M, Bouffard GG, Brooks SY, Caldas GV, Chen NC, Cheng H, Chin CS, Chow W, de Lima LG, Dishuck PC, Durbin R, Dvorkina T, Fiddes IT, Formenti G, Fulton RS, Fungtammasan A, Garrison E, Grady PGS, Graves-Lindsay TA, Hall IM, Hansen NF, Hartley GA, Haukness M, Howe K, Hunkapiller MW, Jain C, Jain M, Jarvis ED, Kerpedjiev P, Kirsche M, Kolmogorov M, Korlach J, Kremitzki M, Li H, Maduro VV, Marschall T, McCartney AM, McDaniel J, Miller DE, Mullikin JC, Myers EW, Olson ND, Paten B, Peluso P, Pevzner PA, Porubsky D, Potapova T, Rogaev EI, Rosenfeld JA, Salzberg SL, Schneider VA, Sedlazeck FJ, Shafin K, Shew CJ, Shumate A, Sims Y, Smit AFA, Soto DC, Sović I, Storer JM, Streets A, Sullivan BA, Thibaud-Nissen F, Torrance J, Wagner J, Walenz BP, Wenger A, Wood JMD, Xiao C, Yan SM, Young AC, Zarate S, Surti U, McCoy RC, Dennis MY, Alexandrov IA, Gerton JL, O'Neill RJ, Timp W, Zook JM, Schatz MC, Eichler EE, Miga KH, Phillippy AM. Nurk S, et al. Among authors: sims y. Science. 2022 Apr;376(6588):44-53. doi: 10.1126/science.abj6987. Epub 2022 Mar 31. Science. 2022. PMID: 35357919 Free PMC article.
Towards complete and error-free genome assemblies of all vertebrate species.
Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J, Lee C, Ko BJ, Chaisson M, Gedman GL, Cantin LJ, Thibaud-Nissen F, Haggerty L, Bista I, Smith M, Haase B, Mountcastle J, Winkler S, Paez S, Howard J, Vernes SC, Lama TM, Grutzner F, Warren WC, Balakrishnan CN, Burt D, George JM, Biegler MT, Iorns D, Digby A, Eason D, Robertson B, Edwards T, Wilkinson M, Turner G, Meyer A, Kautt AF, Franchini P, Detrich HW 3rd, Svardal H, Wagner M, Naylor GJP, Pippel M, Malinsky M, Mooney M, Simbirsky M, Hannigan BT, Pesout T, Houck M, Misuraca A, Kingan SB, Hall R, Kronenberg Z, Sović I, Dunn C, Ning Z, Hastie A, Lee J, Selvaraj S, Green RE, Putnam NH, Gut I, Ghurye J, Garrison E, Sims Y, Collins J, Pelan S, Torrance J, Tracey A, Wood J, Dagnew RE, Guan D, London SE, Clayton DF, Mello CV, Friedrich SR, Lovell PV, Osipova E, Al-Ajli FO, Secomandi S, Kim H, Theofanopoulou C, Hiller M, Zhou Y, Harris RS, Makova KD, Medvedev P, Hoffman J, Masterson P, Clark K, Martin F, Howe K, Flicek P, Walenz BP, Kwak W, Clawson H, Diekhans M, Nassar L, Paten B, Kraus RHS, Crawford AJ, Gilbert MTP, Zhang G, Venkatesh B, Murphy RW, Koepfli KP, Shapiro B,… See abstract for full author list ➔ Rhie A, et al. Among authors: sims y. Nature. 2021 Apr;592(7856):737-746. doi: 10.1038/s41586-021-03451-0. Epub 2021 Apr 28. Nature. 2021. PMID: 33911273 Free PMC article.
Production of platelets in vitro in functionalized 3-dimensional scaffolds mimicking the bone marrow niche.
Foster HR, Colzani M, Bouet G, Howard D, Di Buduo CA, Müller-Sienerth N, Waller AK, Sun Y, Davidenko N, Shepherd JH, Moreau T, Evans AL, Soprano PM, Parsons MEM, Sims YY, Arumugam M, Afshar-Saber W, Turro E, Maguire PB, Best SM, Cameron RE, Balduini A, Wright GJ, Ghevaert C. Foster HR, et al. Among authors: sims yy. Haematologica. 2025 Oct 1;110(10):2451-2462. doi: 10.3324/haematol.2024.286758. Epub 2025 Apr 24. Haematologica. 2025. PMID: 40270202 Free PMC article.
Genomics of cold adaptations in the Antarctic notothenioid fish radiation.
Bista I, Wood JMD, Desvignes T, McCarthy SA, Matschiner M, Ning Z, Tracey A, Torrance J, Sims Y, Chow W, Smith M, Oliver K, Haggerty L, Salzburger W, Postlethwait JH, Howe K, Clark MS, William Detrich H 3rd, Christina Cheng CH, Miska EA, Durbin R. Bista I, et al. Among authors: sims y. Nat Commun. 2023 Jun 9;14(1):3412. doi: 10.1038/s41467-023-38567-6. Nat Commun. 2023. PMID: 37296119 Free PMC article.
Evolution and genetic architecture of sex-limited polymorphism in cuckoos.
Merondun J, Marques CI, Andrade P, Meshcheryagina S, Galván I, Afonso S, Alves JM, Araújo PM, Bachurin G, Balacco J, Bán M, Fedrigo O, Formenti G, Fossøy F, Fülöp A, Golovatin M, Granja S, Hewson C, Honza M, Howe K, Larson G, Marton A, Moskát C, Mountcastle J, Procházka P, Red'kin Y, Sims Y, Šulc M, Tracey A, Wood JMD, Jarvis ED, Hauber ME, Carneiro M, Wolf JBW. Merondun J, et al. Among authors: sims y. Sci Adv. 2024 Apr 26;10(17):eadl5255. doi: 10.1126/sciadv.adl5255. Epub 2024 Apr 24. Sci Adv. 2024. PMID: 38657058 Free PMC article.
The gene-rich genome of the scallop Pecten maximus.
Kenny NJ, McCarthy SA, Dudchenko O, James K, Betteridge E, Corton C, Dolucan J, Mead D, Oliver K, Omer AD, Pelan S, Ryan Y, Sims Y, Skelton J, Smith M, Torrance J, Weisz D, Wipat A, Aiden EL, Howe K, Williams ST. Kenny NJ, et al. Among authors: sims y. Gigascience. 2020 May 1;9(5):giaa037. doi: 10.1093/gigascience/giaa037. Gigascience. 2020. PMID: 32352532 Free PMC article.
Platypus and echidna genomes reveal mammalian biology and evolution.
Zhou Y, Shearwin-Whyatt L, Li J, Song Z, Hayakawa T, Stevens D, Fenelon JC, Peel E, Cheng Y, Pajpach F, Bradley N, Suzuki H, Nikaido M, Damas J, Daish T, Perry T, Zhu Z, Geng Y, Rhie A, Sims Y, Wood J, Haase B, Mountcastle J, Fedrigo O, Li Q, Yang H, Wang J, Johnston SD, Phillippy AM, Howe K, Jarvis ED, Ryder OA, Kaessmann H, Donnelly P, Korlach J, Lewin HA, Graves J, Belov K, Renfree MB, Grutzner F, Zhou Q, Zhang G. Zhou Y, et al. Among authors: sims y. Nature. 2021 Apr;592(7856):756-762. doi: 10.1038/s41586-020-03039-0. Epub 2021 Jan 6. Nature. 2021. PMID: 33408411 Free PMC article.
Chromosome-scale Genome Assembly of the Rough Periwinkle Littorina saxatilis.
De Jode A, Faria R, Formenti G, Sims Y, Smith TP, Tracey A, Wood JMD, Zagrodzka ZB, Johannesson K, Butlin RK, Leder EH. De Jode A, et al. Among authors: sims y. Genome Biol Evol. 2024 Apr 2;16(4):evae076. doi: 10.1093/gbe/evae076. Genome Biol Evol. 2024. PMID: 38584387 Free PMC article.
A chromosome-level genome assembly for the dugong (Dugong dugon).
Baker DN, Abueg L, Escalona M, Farquharson KA, Lanyon JM, Le Duc D, Schöneberg T, Absolon D, Sims Y, Fedrigo O, Jarvis ED, Belov K, Hogg CJ, Shapiro B. Baker DN, et al. Among authors: sims y. J Hered. 2024 Mar 13;115(2):212-220. doi: 10.1093/jhered/esae003. J Hered. 2024. PMID: 38245832 Free PMC article.
46 results