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Molecular epidemiology of the SARS-CoV-2 variant Omicron BA.2 sub-lineage in Denmark, 29 November 2021 to 2 January 2022.
Fonager J, Bennedbæk M, Bager P, Wohlfahrt J, Ellegaard KM, Ingham AC, Edslev SM, Stegger M, Sieber RN, Lassauniere R, Fomsgaard A, Lillebaek T, Svarrer CW, Møller FT, Møller CH, Legarth R, Sydenham TV, Steinke K, Paulsen SJ, Castruita JAS, Schneider UV, Schouw CH, Nielsen XC, Overvad M, Nielsen RT, Marvig RL, Pedersen MS, Nielsen L, Nilsson LL, Bybjerg-Grauholm J, Tarpgaard IH, Ebsen TS, Lam JUH, Gunalan V, Rasmussen M. Fonager J, et al. Among authors: svarrer cw. Euro Surveill. 2022 Mar;27(10):2200181. doi: 10.2807/1560-7917.ES.2022.27.10.2200181. Euro Surveill. 2022. PMID: 35272746 Free PMC article.
SARS-CoV-2 sequencing artifacts associated with targeted PCR enrichment and read mapping.
Ellegaard KM, Gunalan V, Sieber R, Baig SJ, Larsen NB, Bennedbæk M, Bybjerg-Grauholm J, Escobar-Herrera LA, Gress T, Thorsen TH, Krusager A, Aasbjerg GN, Al-Tamimi NS, Westergaard C, Svarrer CW, Rasmussen M, Stegger M. Ellegaard KM, et al. Among authors: svarrer cw. PLoS One. 2025 Oct 16;20(10):e0334009. doi: 10.1371/journal.pone.0334009. eCollection 2025. PLoS One. 2025. PMID: 41100451 Free PMC article.
Introduction and transmission of SARS-CoV-2 lineage B.1.1.7, Alpha variant, in Denmark.
Michaelsen TY, Bennedbæk M, Christiansen LE, Jørgensen MSF, Møller CH, Sørensen EA, Knutsson S, Brandt J, Jensen TBN, Chiche-Lapierre C, Collados EF, Sørensen T, Petersen C, Le-Quy V, Sereika M, Hansen FT, Rasmussen M, Fonager J, Karst SM, Marvig RL, Stegger M, Sieber RN, Skov R, Legarth R, Krause TG, Fomsgaard A; Danish COVID-19 Genome Consortium (DCGC); Albertsen M. Michaelsen TY, et al. Genome Med. 2022 May 4;14(1):47. doi: 10.1186/s13073-022-01045-7. Genome Med. 2022. PMID: 35505393 Free PMC article.
Increased transmissibility of SARS-CoV-2 lineage B.1.1.7 by age and viral load.
Lyngse FP, Mølbak K, Skov RL, Christiansen LE, Mortensen LH, Albertsen M, Møller CH, Krause TG, Rasmussen M, Michaelsen TY, Voldstedlund M, Fonager J, Steenhard N; Danish Covid-19 Genome Consortium; Kirkeby CT. Lyngse FP, et al. Nat Commun. 2021 Dec 13;12(1):7251. doi: 10.1038/s41467-021-27202-x. Nat Commun. 2021. PMID: 34903718 Free PMC article.
Legionella antibiotic susceptibility testing: is it time for international standardization and evidence-based guidance?
Portal E, Descours G, Ginevra C, Mentasti M, Afshar B, Chand M, Day J, Echahidi F, Franzin L, Gaia V, Lück C, Meghraoui A, Moran-Gilad J, Ricci ML, Lina G, Uldum S, Winchell J, Howe R, Bernard K, Spiller OB, Chalker VJ, Jarraud S; ESCMID Study Group for Legionella Infections (ESGLI). Portal E, et al. J Antimicrob Chemother. 2021 Apr 13;76(5):1113-1116. doi: 10.1093/jac/dkab027. J Antimicrob Chemother. 2021. PMID: 33608737