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Species-wide genomics of kākāpō provides tools to accelerate recovery.
Guhlin J, Le Lec MF, Wold J, Koot E, Winter D, Biggs PJ, Galla SJ, Urban L, Foster Y, Cox MP, Digby A, Uddstrom LR, Eason D, Vercoe D, Davis T; Kākāpō Recovery Team; Howard JT, Jarvis ED, Robertson FE, Robertson BC, Gemmell NJ, Steeves TE, Santure AW, Dearden PK. Guhlin J, et al. Among authors: uddstrom lr. Nat Ecol Evol. 2023 Oct;7(10):1693-1705. doi: 10.1038/s41559-023-02165-y. Epub 2023 Aug 28. Nat Ecol Evol. 2023. PMID: 37640765
Host phylogeny shapes viral transmission networks in an island ecosystem.
French RK, Anderson SH, Cain KE, Greene TC, Minor M, Miskelly CM, Montoya JM, Wille M, Muller CG, Taylor MW, Digby A; Kākāpō Recovery Team; Holmes EC. French RK, et al. Nat Ecol Evol. 2023 Nov;7(11):1834-1843. doi: 10.1038/s41559-023-02192-9. Epub 2023 Sep 7. Nat Ecol Evol. 2023. PMID: 37679456 Free PMC article.
Avian Influenza Virus Surveillance Across New Zealand and Its Subantarctic Islands Detects H1N9 in Migratory Shorebirds, but Not 2.3.4.4b HPAI H5N1.
Waller SJ, Wierenga JR, Heremia L, Darnley JA, de Vries I, Dubrulle J, Robinson Z, Miller AK, Niebuhr CN, Melville DS, Schuckard R, Battley PF, Wille M, Alai B, Cole R, Cooper J, Ellenberg U, Elliott G, Faulkner J, Fischer JH, Fyfe J, Hay L, Houston D, Keys BC, Long J, Long R, Mattern T, McGovern H, McNutt L, Moore P, Neil O, Osborne J, Pagé AS, Parker KA, Perry M, Philp B, Reid J, Rexer-Huber K, Russell JC, Sagar R, Ruru TT, Thompson T, Thomson L, Tinnemans J, Uddstrom L, Waipoua TA, Walker K, Whitehead E, Wickes C, Young MJ, McInnes K, Winter D, Geoghegan JL. Waller SJ, et al. Among authors: uddstrom l. Influenza Other Respir Viruses. 2025 Apr;19(4):e70099. doi: 10.1111/irv.70099. Influenza Other Respir Viruses. 2025. PMID: 40148670 Free PMC article.
The genetic basis of the kākāpō structural color polymorphism suggests balancing selection by an extinct apex predator.
Urban L, Santure AW, Uddstrom L, Digby A, Vercoe D, Eason D, Crane J; Kākāpō Recovery Team; Wylie MJ, Davis T, LeLec MF, Guhlin J, Poulton S, Slate J, Alexander A, Fuentes-Cross P, Dearden PK, Gemmell NJ, Azeem F, Weyland M, Schwefel HGL, van Oosterhout C, Morales HE. Urban L, et al. Among authors: uddstrom l. PLoS Biol. 2024 Sep 10;22(9):e3002755. doi: 10.1371/journal.pbio.3002755. eCollection 2024 Sep. PLoS Biol. 2024. PMID: 39255270 Free PMC article.
Evidence for a Role of Extraintestinal Pathogenic Escherichia coli, Enterococcus faecalis and Streptococcus gallolyticus in the Aetiology of Exudative Cloacitis in the Critically Endangered Kākāpō (Strigops habroptilus).
French RK, Waller SJ, Wierenga JR, Grimwood RM, Hodgkinson-Bean J, Digby A, Uddstrom L, Eason D; Kākāpō Recovery Team; Argilla LS, Biggs PJ, Cookson A, French NP, Geoghegan JL. French RK, et al. Among authors: uddstrom l. Mol Ecol. 2025 Dec;34(24):e17761. doi: 10.1111/mec.17761. Epub 2025 Apr 19. Mol Ecol. 2025. PMID: 40251883 Free PMC article.